Strain Fitness in Marinobacter adhaerens HP15 around HP15_1561

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1560 and HP15_1561 overlap by 4 nucleotidesHP15_1561 and HP15_1562 are separated by 161 nucleotidesHP15_1562 and HP15_1563 are separated by 11 nucleotidesHP15_1563 and HP15_1564 overlap by 8 nucleotides HP15_1560: HP15_1560 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein, at 1,640,358 to 1,642,691 _1560 HP15_1561: HP15_1561 - (2Fe-2S)-binding domain protein, at 1,642,688 to 1,643,149 _1561 HP15_1562: HP15_1562 - conserved hypothetical protein, at 1,643,311 to 1,643,715 _1562 HP15_1563: HP15_1563 - branched-chain amino acid transport, at 1,643,727 to 1,644,056 _1563 HP15_1564: HP15_1564 - AzlC-like protein, at 1,644,049 to 1,644,753 _1564 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1641.753 kb on + strand, within HP15_1560at 1641.761 kb on - strand, within HP15_1560at 1641.761 kb on - strand, within HP15_1560at 1641.821 kb on + strand, within HP15_1560at 1641.822 kb on + strand, within HP15_1560at 1641.830 kb on - strand, within HP15_1560at 1641.854 kb on - strand, within HP15_1560at 1641.889 kb on - strand, within HP15_1560at 1641.922 kb on - strand, within HP15_1560at 1641.939 kb on + strand, within HP15_1560at 1641.979 kb on + strand, within HP15_1560at 1641.979 kb on + strand, within HP15_1560at 1641.982 kb on - strand, within HP15_1560at 1641.989 kb on - strand, within HP15_1560at 1642.008 kb on + strand, within HP15_1560at 1642.032 kb on - strand, within HP15_1560at 1642.051 kb on + strand, within HP15_1560at 1642.059 kb on - strand, within HP15_1560at 1642.221 kb on - strand, within HP15_1560at 1642.222 kb on + strand, within HP15_1560at 1642.308 kb on - strand, within HP15_1560at 1642.366 kb on + strand, within HP15_1560at 1642.366 kb on + strand, within HP15_1560at 1642.375 kb on + strand, within HP15_1560at 1642.376 kb on + strand, within HP15_1560at 1642.381 kb on + strand, within HP15_1560at 1642.381 kb on + strand, within HP15_1560at 1642.389 kb on - strand, within HP15_1560at 1642.389 kb on - strand, within HP15_1560at 1642.389 kb on - strand, within HP15_1560at 1642.396 kb on - strand, within HP15_1560at 1642.565 kb on - strandat 1642.608 kb on + strandat 1642.608 kb on + strandat 1642.825 kb on - strand, within HP15_1561at 1642.848 kb on + strandat 1642.848 kb on + strand, within HP15_1561at 1642.884 kb on + strand, within HP15_1561at 1642.892 kb on + strand, within HP15_1561at 1643.010 kb on - strand, within HP15_1561at 1643.087 kb on - strand, within HP15_1561at 1643.258 kb on + strandat 1643.258 kb on + strandat 1643.263 kb on + strandat 1643.266 kb on - strandat 1643.268 kb on + strandat 1643.281 kb on - strandat 1643.318 kb on - strandat 1643.338 kb on - strandat 1643.458 kb on + strand, within HP15_1562at 1643.474 kb on - strand, within HP15_1562at 1643.515 kb on - strand, within HP15_1562at 1643.534 kb on + strand, within HP15_1562at 1643.560 kb on + strand, within HP15_1562at 1643.773 kb on + strand, within HP15_1563at 1643.784 kb on - strand, within HP15_1563at 1644.116 kb on + strandat 1644.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,641,753 + HP15_1560 0.60 -0.2
1,641,761 - HP15_1560 0.60 +0.4
1,641,761 - HP15_1560 0.60 +0.4
1,641,821 + HP15_1560 0.63 +1.6
1,641,822 + HP15_1560 0.63 +0.6
1,641,830 - HP15_1560 0.63 -0.2
1,641,854 - HP15_1560 0.64 +0.7
1,641,889 - HP15_1560 0.66 -0.6
1,641,922 - HP15_1560 0.67 -0.2
1,641,939 + HP15_1560 0.68 -0.5
1,641,979 + HP15_1560 0.69 +4.3
1,641,979 + HP15_1560 0.69 +0.3
1,641,982 - HP15_1560 0.70 +0.5
1,641,989 - HP15_1560 0.70 -0.3
1,642,008 + HP15_1560 0.71 -0.3
1,642,032 - HP15_1560 0.72 +0.5
1,642,051 + HP15_1560 0.73 -2.3
1,642,059 - HP15_1560 0.73 +0.3
1,642,221 - HP15_1560 0.80 -0.3
1,642,222 + HP15_1560 0.80 -0.0
1,642,308 - HP15_1560 0.84 +0.5
1,642,366 + HP15_1560 0.86 +0.1
1,642,366 + HP15_1560 0.86 -2.2
1,642,375 + HP15_1560 0.86 -1.4
1,642,376 + HP15_1560 0.86 -0.6
1,642,381 + HP15_1560 0.87 -0.5
1,642,381 + HP15_1560 0.87 +0.4
1,642,389 - HP15_1560 0.87 -2.8
1,642,389 - HP15_1560 0.87 -1.0
1,642,389 - HP15_1560 0.87 +0.8
1,642,396 - HP15_1560 0.87 +0.1
1,642,565 - +0.7
1,642,608 + +0.4
1,642,608 + -0.9
1,642,825 - HP15_1561 0.30 +1.1
1,642,848 + -1.2
1,642,848 + HP15_1561 0.35 +0.6
1,642,884 + HP15_1561 0.42 -2.2
1,642,892 + HP15_1561 0.44 +0.7
1,643,010 - HP15_1561 0.70 +1.6
1,643,087 - HP15_1561 0.86 +0.1
1,643,258 + -0.5
1,643,258 + +1.0
1,643,263 + +4.8
1,643,266 - -0.8
1,643,268 + -0.6
1,643,281 - +0.4
1,643,318 - -0.5
1,643,338 - -0.7
1,643,458 + HP15_1562 0.36 +0.4
1,643,474 - HP15_1562 0.40 -0.5
1,643,515 - HP15_1562 0.50 +0.4
1,643,534 + HP15_1562 0.55 +0.7
1,643,560 + HP15_1562 0.61 -1.4
1,643,773 + HP15_1563 0.14 -0.6
1,643,784 - HP15_1563 0.17 +0.5
1,644,116 + -0.6
1,644,116 + -0.4

Or see this region's nucleotide sequence