Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15800 and PGA1_c15810 are separated by 49 nucleotides PGA1_c15810 and PGA1_c15820 are separated by 27 nucleotides PGA1_c15820 and PGA1_c15830 overlap by 4 nucleotides
PGA1_c15800: PGA1_c15800 - phosphate regulon sensor protein phoR-like protein, at 1,639,624 to 1,640,664
_c15800
PGA1_c15810: PGA1_c15810 - pyridoxal phosphate-dependent enzyme, cysteine / methionine metabolism, at 1,640,714 to 1,641,871
_c15810
PGA1_c15820: PGA1_c15820 - putative phenylacetic acid degradation protein, at 1,641,899 to 1,642,420
_c15820
PGA1_c15830: PGA1_c15830 - guanylate kinase Gmk, at 1,642,417 to 1,643,058
_c15830
Position (kb)
1640
1641
1642 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1639.726 kb on + strand at 1639.734 kb on - strand, within PGA1_c15800 at 1639.762 kb on + strand, within PGA1_c15800 at 1639.946 kb on - strand, within PGA1_c15800 at 1639.973 kb on + strand, within PGA1_c15800 at 1639.982 kb on + strand, within PGA1_c15800 at 1640.062 kb on + strand, within PGA1_c15800 at 1640.070 kb on - strand, within PGA1_c15800 at 1640.070 kb on - strand, within PGA1_c15800 at 1640.070 kb on - strand, within PGA1_c15800 at 1640.070 kb on - strand, within PGA1_c15800 at 1640.277 kb on + strand, within PGA1_c15800 at 1640.277 kb on + strand, within PGA1_c15800 at 1640.277 kb on + strand, within PGA1_c15800 at 1640.277 kb on + strand, within PGA1_c15800 at 1640.348 kb on + strand, within PGA1_c15800 at 1640.353 kb on + strand, within PGA1_c15800 at 1640.519 kb on - strand, within PGA1_c15800 at 1640.544 kb on + strand, within PGA1_c15800 at 1640.564 kb on - strand at 1640.667 kb on + strand at 1640.667 kb on + strand at 1640.741 kb on + strand at 1640.741 kb on + strand at 1640.741 kb on + strand at 1640.749 kb on - strand at 1640.749 kb on - strand at 1640.749 kb on - strand at 1640.749 kb on - strand at 1640.759 kb on - strand at 1640.760 kb on - strand at 1640.827 kb on + strand at 1640.835 kb on - strand, within PGA1_c15810 at 1640.835 kb on - strand, within PGA1_c15810 at 1640.846 kb on + strand, within PGA1_c15810 at 1640.914 kb on - strand, within PGA1_c15810 at 1640.934 kb on - strand, within PGA1_c15810 at 1640.955 kb on + strand, within PGA1_c15810 at 1641.099 kb on + strand, within PGA1_c15810 at 1641.107 kb on - strand, within PGA1_c15810 at 1641.159 kb on - strand, within PGA1_c15810 at 1641.180 kb on - strand, within PGA1_c15810 at 1641.316 kb on + strand, within PGA1_c15810 at 1641.325 kb on + strand, within PGA1_c15810 at 1641.384 kb on + strand, within PGA1_c15810 at 1641.392 kb on - strand, within PGA1_c15810 at 1641.402 kb on - strand, within PGA1_c15810 at 1641.449 kb on - strand, within PGA1_c15810 at 1641.455 kb on - strand, within PGA1_c15810 at 1641.719 kb on + strand, within PGA1_c15810 at 1641.725 kb on + strand, within PGA1_c15810 at 1641.734 kb on + strand, within PGA1_c15810 at 1641.739 kb on + strand, within PGA1_c15810 at 1641.746 kb on + strand, within PGA1_c15810 at 1641.747 kb on - strand, within PGA1_c15810 at 1641.747 kb on - strand, within PGA1_c15810 at 1641.747 kb on - strand, within PGA1_c15810 at 1641.747 kb on - strand, within PGA1_c15810 at 1641.808 kb on + strand at 1641.816 kb on - strand at 1641.838 kb on + strand at 1641.858 kb on + strand at 1641.859 kb on - strand at 1641.859 kb on - strand at 1641.880 kb on - strand at 1641.897 kb on + strand at 1641.897 kb on + strand at 1641.897 kb on + strand at 1641.897 kb on + strand at 1641.905 kb on - strand at 1641.905 kb on - strand at 1641.905 kb on - strand at 1641.905 kb on - strand at 1641.982 kb on - strand, within PGA1_c15820 at 1641.988 kb on - strand, within PGA1_c15820 at 1641.993 kb on - strand, within PGA1_c15820 at 1642.125 kb on + strand, within PGA1_c15820 at 1642.128 kb on - strand, within PGA1_c15820 at 1642.160 kb on - strand, within PGA1_c15820 at 1642.203 kb on + strand, within PGA1_c15820 at 1642.249 kb on + strand, within PGA1_c15820 at 1642.257 kb on - strand, within PGA1_c15820 at 1642.257 kb on - strand, within PGA1_c15820 at 1642.266 kb on + strand, within PGA1_c15820 at 1642.285 kb on - strand, within PGA1_c15820 at 1642.333 kb on + strand, within PGA1_c15820 at 1642.341 kb on - strand, within PGA1_c15820 at 1642.341 kb on - strand, within PGA1_c15820 at 1642.341 kb on - strand, within PGA1_c15820 at 1642.341 kb on - strand, within PGA1_c15820 at 1642.373 kb on - strand at 1642.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 1,639,726 + +0.2 1,639,734 - PGA1_c15800 0.11 -0.7 1,639,762 + PGA1_c15800 0.13 -0.5 1,639,946 - PGA1_c15800 0.31 +1.3 1,639,973 + PGA1_c15800 0.34 +0.0 1,639,982 + PGA1_c15800 0.34 -0.5 1,640,062 + PGA1_c15800 0.42 +1.0 1,640,070 - PGA1_c15800 0.43 +0.2 1,640,070 - PGA1_c15800 0.43 +0.5 1,640,070 - PGA1_c15800 0.43 +1.3 1,640,070 - PGA1_c15800 0.43 -0.1 1,640,277 + PGA1_c15800 0.63 +0.5 1,640,277 + PGA1_c15800 0.63 -0.5 1,640,277 + PGA1_c15800 0.63 +0.7 1,640,277 + PGA1_c15800 0.63 -0.6 1,640,348 + PGA1_c15800 0.70 +0.9 1,640,353 + PGA1_c15800 0.70 +0.2 1,640,519 - PGA1_c15800 0.86 +0.4 1,640,544 + PGA1_c15800 0.88 +1.8 1,640,564 - +0.1 1,640,667 + -0.4 1,640,667 + +0.5 1,640,741 + -0.5 1,640,741 + +0.8 1,640,741 + +0.5 1,640,749 - +0.0 1,640,749 - -2.5 1,640,749 - +0.0 1,640,749 - -0.0 1,640,759 - -0.3 1,640,760 - +2.4 1,640,827 + +1.1 1,640,835 - PGA1_c15810 0.10 +0.1 1,640,835 - PGA1_c15810 0.10 -0.3 1,640,846 + PGA1_c15810 0.11 -1.2 1,640,914 - PGA1_c15810 0.17 +1.2 1,640,934 - PGA1_c15810 0.19 +0.4 1,640,955 + PGA1_c15810 0.21 -0.2 1,641,099 + PGA1_c15810 0.33 +0.5 1,641,107 - PGA1_c15810 0.34 +1.1 1,641,159 - PGA1_c15810 0.38 +0.8 1,641,180 - PGA1_c15810 0.40 +2.1 1,641,316 + PGA1_c15810 0.52 +0.8 1,641,325 + PGA1_c15810 0.53 +1.3 1,641,384 + PGA1_c15810 0.58 -0.0 1,641,392 - PGA1_c15810 0.59 +0.9 1,641,402 - PGA1_c15810 0.59 +1.5 1,641,449 - PGA1_c15810 0.63 -0.8 1,641,455 - PGA1_c15810 0.64 +0.3 1,641,719 + PGA1_c15810 0.87 -1.5 1,641,725 + PGA1_c15810 0.87 +0.5 1,641,734 + PGA1_c15810 0.88 +0.9 1,641,739 + PGA1_c15810 0.89 +0.6 1,641,746 + PGA1_c15810 0.89 -1.0 1,641,747 - PGA1_c15810 0.89 +1.0 1,641,747 - PGA1_c15810 0.89 +1.0 1,641,747 - PGA1_c15810 0.89 +0.5 1,641,747 - PGA1_c15810 0.89 -0.1 1,641,808 + -0.3 1,641,816 - -0.8 1,641,838 + -0.0 1,641,858 + +0.8 1,641,859 - -0.1 1,641,859 - +0.4 1,641,880 - +1.1 1,641,897 + +0.3 1,641,897 + -0.2 1,641,897 + +1.0 1,641,897 + -0.2 1,641,905 - -0.5 1,641,905 - +0.2 1,641,905 - +1.0 1,641,905 - -0.5 1,641,982 - PGA1_c15820 0.16 +0.8 1,641,988 - PGA1_c15820 0.17 +0.4 1,641,993 - PGA1_c15820 0.18 -0.4 1,642,125 + PGA1_c15820 0.43 +0.9 1,642,128 - PGA1_c15820 0.44 +0.6 1,642,160 - PGA1_c15820 0.50 +0.7 1,642,203 + PGA1_c15820 0.58 -0.8 1,642,249 + PGA1_c15820 0.67 +1.0 1,642,257 - PGA1_c15820 0.69 -1.0 1,642,257 - PGA1_c15820 0.69 +0.0 1,642,266 + PGA1_c15820 0.70 -0.5 1,642,285 - PGA1_c15820 0.74 -1.2 1,642,333 + PGA1_c15820 0.83 +1.4 1,642,341 - PGA1_c15820 0.85 +0.1 1,642,341 - PGA1_c15820 0.85 -0.3 1,642,341 - PGA1_c15820 0.85 +0.7 1,642,341 - PGA1_c15820 0.85 -0.7 1,642,373 - +0.5 1,642,384 + +0.1
Or see this region's nucleotide sequence