Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15320 and PGA1_c15330 overlap by 8 nucleotides PGA1_c15330 and PGA1_c15340 overlap by 1 nucleotides PGA1_c15340 and PGA1_c15350 are separated by 188 nucleotides
PGA1_c15320: PGA1_c15320 - Predicted hydrolases of HD superfamily, at 1,596,764 to 1,597,936
_c15320
PGA1_c15330: PGA1_c15330 - hypothetical protein, at 1,597,929 to 1,598,177
_c15330
PGA1_c15340: PGA1_c15340 - Predicted hydrolase of the alpha/beta superfamily, at 1,598,177 to 1,598,830
_c15340
PGA1_c15350: PGA1_c15350 - putative transcriptional regulator, at 1,599,019 to 1,599,477
_c15350
Position (kb)
1597
1598
1599 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1596.975 kb on - strand, within PGA1_c15320 at 1597.095 kb on + strand, within PGA1_c15320 at 1597.156 kb on + strand, within PGA1_c15320 at 1597.164 kb on - strand, within PGA1_c15320 at 1597.197 kb on + strand, within PGA1_c15320 at 1597.197 kb on + strand, within PGA1_c15320 at 1597.200 kb on - strand, within PGA1_c15320 at 1597.205 kb on - strand, within PGA1_c15320 at 1597.321 kb on + strand, within PGA1_c15320 at 1597.368 kb on + strand, within PGA1_c15320 at 1597.391 kb on + strand, within PGA1_c15320 at 1597.398 kb on + strand, within PGA1_c15320 at 1597.399 kb on - strand, within PGA1_c15320 at 1597.437 kb on + strand, within PGA1_c15320 at 1597.437 kb on + strand, within PGA1_c15320 at 1597.437 kb on + strand, within PGA1_c15320 at 1597.445 kb on - strand, within PGA1_c15320 at 1597.535 kb on - strand, within PGA1_c15320 at 1597.738 kb on - strand, within PGA1_c15320 at 1597.743 kb on - strand, within PGA1_c15320 at 1597.784 kb on - strand, within PGA1_c15320 at 1597.784 kb on - strand, within PGA1_c15320 at 1597.957 kb on + strand, within PGA1_c15330 at 1597.965 kb on - strand, within PGA1_c15330 at 1598.007 kb on + strand, within PGA1_c15330 at 1598.056 kb on - strand, within PGA1_c15330 at 1598.118 kb on + strand, within PGA1_c15330 at 1599.000 kb on + strand at 1599.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 1,596,975 - PGA1_c15320 0.18 +1.4 1,597,095 + PGA1_c15320 0.28 +0.5 1,597,156 + PGA1_c15320 0.33 +1.3 1,597,164 - PGA1_c15320 0.34 +0.1 1,597,197 + PGA1_c15320 0.37 -0.9 1,597,197 + PGA1_c15320 0.37 +0.7 1,597,200 - PGA1_c15320 0.37 -2.8 1,597,205 - PGA1_c15320 0.38 +0.3 1,597,321 + PGA1_c15320 0.47 +0.7 1,597,368 + PGA1_c15320 0.51 -0.1 1,597,391 + PGA1_c15320 0.53 -0.9 1,597,398 + PGA1_c15320 0.54 -0.2 1,597,399 - PGA1_c15320 0.54 +0.4 1,597,437 + PGA1_c15320 0.57 -1.2 1,597,437 + PGA1_c15320 0.57 -0.6 1,597,437 + PGA1_c15320 0.57 +0.5 1,597,445 - PGA1_c15320 0.58 -1.5 1,597,535 - PGA1_c15320 0.66 +0.1 1,597,738 - PGA1_c15320 0.83 +0.7 1,597,743 - PGA1_c15320 0.83 +0.8 1,597,784 - PGA1_c15320 0.87 -2.3 1,597,784 - PGA1_c15320 0.87 +1.2 1,597,957 + PGA1_c15330 0.11 -0.1 1,597,965 - PGA1_c15330 0.14 +1.4 1,598,007 + PGA1_c15330 0.31 -0.9 1,598,056 - PGA1_c15330 0.51 +0.9 1,598,118 + PGA1_c15330 0.76 +0.8 1,599,000 + +0.2 1,599,000 + +0.6
Or see this region's nucleotide sequence