Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1334 and HP15_1335 are separated by 9 nucleotides HP15_1335 and HP15_1336 are separated by 116 nucleotides HP15_1336 and HP15_1337 are separated by 62 nucleotides
HP15_1334: HP15_1334 - Error-prone polymerase for DNA repair (imuB or polY like) (from data) , at 1,402,295 to 1,403,713
_1334
HP15_1335: HP15_1335 - uncharacterized conserved protein UCP037290, at 1,403,723 to 1,404,412
_1335
HP15_1336: HP15_1336 - pterin-4-alpha-carbinolamine dehydratase, at 1,404,529 to 1,404,888
_1336
HP15_1337: HP15_1337 - conserved hypothetical protein, membrane, at 1,404,951 to 1,405,226
_1337
Position (kb)
1403
1404
1405 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 1402.968 kb on + strand, within HP15_1334 at 1402.978 kb on + strand, within HP15_1334 at 1403.179 kb on - strand, within HP15_1334 at 1403.179 kb on - strand, within HP15_1334 at 1403.250 kb on + strand, within HP15_1334 at 1403.305 kb on - strand, within HP15_1334 at 1403.312 kb on + strand, within HP15_1334 at 1403.343 kb on - strand, within HP15_1334 at 1403.419 kb on - strand, within HP15_1334 at 1403.468 kb on + strand, within HP15_1334 at 1403.516 kb on - strand, within HP15_1334 at 1403.605 kb on - strand at 1403.755 kb on - strand at 1403.780 kb on - strand at 1403.917 kb on - strand, within HP15_1335 at 1403.919 kb on + strand, within HP15_1335 at 1403.932 kb on + strand, within HP15_1335 at 1403.949 kb on - strand, within HP15_1335 at 1403.974 kb on + strand, within HP15_1335 at 1404.095 kb on + strand, within HP15_1335 at 1404.105 kb on + strand, within HP15_1335 at 1404.108 kb on - strand, within HP15_1335 at 1404.136 kb on + strand, within HP15_1335 at 1404.278 kb on + strand, within HP15_1335 at 1404.361 kb on + strand at 1404.381 kb on + strand at 1404.403 kb on - strand at 1404.549 kb on + strand at 1404.564 kb on - strand at 1404.571 kb on - strand, within HP15_1336 at 1404.710 kb on + strand, within HP15_1336 at 1404.718 kb on - strand, within HP15_1336 at 1404.847 kb on - strand, within HP15_1336 at 1404.847 kb on - strand, within HP15_1336 at 1404.876 kb on - strand at 1404.954 kb on + strand at 1404.990 kb on - strand, within HP15_1337 at 1405.034 kb on - strand, within HP15_1337 at 1405.271 kb on - strand at 1405.396 kb on + strand at 1405.401 kb on + strand at 1405.401 kb on + strand at 1405.409 kb on - strand at 1405.409 kb on - strand at 1405.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,402,968 + HP15_1334 0.47 -2.7 1,402,978 + HP15_1334 0.48 -5.8 1,403,179 - HP15_1334 0.62 -2.7 1,403,179 - HP15_1334 0.62 -2.8 1,403,250 + HP15_1334 0.67 -3.4 1,403,305 - HP15_1334 0.71 -3.3 1,403,312 + HP15_1334 0.72 -4.1 1,403,343 - HP15_1334 0.74 -3.3 1,403,419 - HP15_1334 0.79 -4.6 1,403,468 + HP15_1334 0.83 -4.8 1,403,516 - HP15_1334 0.86 -4.0 1,403,605 - -2.6 1,403,755 - -4.3 1,403,780 - -3.4 1,403,917 - HP15_1335 0.28 -4.1 1,403,919 + HP15_1335 0.28 -5.6 1,403,932 + HP15_1335 0.30 -2.8 1,403,949 - HP15_1335 0.33 -1.8 1,403,974 + HP15_1335 0.36 -3.8 1,404,095 + HP15_1335 0.54 -1.8 1,404,105 + HP15_1335 0.55 -4.5 1,404,108 - HP15_1335 0.56 -3.7 1,404,136 + HP15_1335 0.60 -6.6 1,404,278 + HP15_1335 0.80 -5.7 1,404,361 + -5.8 1,404,381 + -2.8 1,404,403 - -3.6 1,404,549 + +0.2 1,404,564 - +0.2 1,404,571 - HP15_1336 0.12 -0.7 1,404,710 + HP15_1336 0.50 +0.7 1,404,718 - HP15_1336 0.53 -0.2 1,404,847 - HP15_1336 0.88 +0.4 1,404,847 - HP15_1336 0.88 +0.1 1,404,876 - +0.3 1,404,954 + +0.4 1,404,990 - HP15_1337 0.14 -1.2 1,405,034 - HP15_1337 0.30 +2.1 1,405,271 - +0.5 1,405,396 + +0.1 1,405,401 + -0.0 1,405,401 + +0.6 1,405,409 - +0.0 1,405,409 - +0.4 1,405,409 - +0.7
Or see this region's nucleotide sequence