Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13640

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13630 and PGA1_c13640 are separated by 24 nucleotidesPGA1_c13640 and PGA1_c13650 overlap by 8 nucleotidesPGA1_c13650 and PGA1_c13660 are separated by 2 nucleotides PGA1_c13630: PGA1_c13630 - 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal., at 1,408,175 to 1,409,122 _c13630 PGA1_c13640: PGA1_c13640 - Phosphopantetheine attachment site., at 1,409,147 to 1,409,407 _c13640 PGA1_c13650: PGA1_c13650 - hypothetical protein, at 1,409,400 to 1,410,080 _c13650 PGA1_c13660: PGA1_c13660 - hypothetical protein, at 1,410,083 to 1,410,619 _c13660 Position (kb) 1409 1410Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1408.149 kb on + strandat 1408.149 kb on + strandat 1408.157 kb on - strandat 1408.157 kb on - strandat 1408.177 kb on + strandat 1408.182 kb on + strandat 1408.244 kb on - strandat 1408.248 kb on + strandat 1408.248 kb on + strandat 1408.248 kb on + strandat 1408.248 kb on + strandat 1408.248 kb on + strandat 1408.253 kb on + strandat 1408.255 kb on + strandat 1408.256 kb on - strandat 1408.256 kb on - strandat 1408.256 kb on - strandat 1408.256 kb on - strandat 1408.256 kb on - strandat 1408.256 kb on - strandat 1408.256 kb on - strandat 1408.256 kb on - strandat 1408.256 kb on - strandat 1408.260 kb on + strandat 1408.277 kb on - strand, within PGA1_c13630at 1408.283 kb on - strand, within PGA1_c13630at 1408.325 kb on + strand, within PGA1_c13630at 1408.325 kb on + strand, within PGA1_c13630at 1408.333 kb on - strand, within PGA1_c13630at 1408.357 kb on - strand, within PGA1_c13630at 1408.401 kb on - strand, within PGA1_c13630at 1408.403 kb on - strand, within PGA1_c13630at 1408.427 kb on + strand, within PGA1_c13630at 1408.427 kb on + strand, within PGA1_c13630at 1408.435 kb on - strand, within PGA1_c13630at 1408.435 kb on - strand, within PGA1_c13630at 1408.435 kb on - strand, within PGA1_c13630at 1408.435 kb on - strand, within PGA1_c13630at 1408.442 kb on + strand, within PGA1_c13630at 1408.442 kb on + strand, within PGA1_c13630at 1408.442 kb on + strand, within PGA1_c13630at 1408.442 kb on + strand, within PGA1_c13630at 1408.447 kb on + strand, within PGA1_c13630at 1408.450 kb on - strand, within PGA1_c13630at 1408.450 kb on - strand, within PGA1_c13630at 1408.450 kb on - strand, within PGA1_c13630at 1408.450 kb on - strand, within PGA1_c13630at 1408.477 kb on - strand, within PGA1_c13630at 1408.524 kb on + strand, within PGA1_c13630at 1408.553 kb on - strand, within PGA1_c13630at 1408.575 kb on - strand, within PGA1_c13630at 1408.621 kb on - strand, within PGA1_c13630at 1408.651 kb on + strand, within PGA1_c13630at 1408.659 kb on - strand, within PGA1_c13630at 1408.674 kb on - strand, within PGA1_c13630at 1408.701 kb on + strand, within PGA1_c13630at 1408.706 kb on + strand, within PGA1_c13630at 1408.711 kb on + strand, within PGA1_c13630at 1408.713 kb on + strand, within PGA1_c13630at 1408.714 kb on - strand, within PGA1_c13630at 1408.716 kb on - strand, within PGA1_c13630at 1408.719 kb on - strand, within PGA1_c13630at 1408.721 kb on - strand, within PGA1_c13630at 1408.749 kb on + strand, within PGA1_c13630at 1408.758 kb on - strand, within PGA1_c13630at 1408.775 kb on - strand, within PGA1_c13630at 1408.792 kb on - strand, within PGA1_c13630at 1408.815 kb on + strand, within PGA1_c13630at 1408.815 kb on + strand, within PGA1_c13630at 1408.820 kb on + strand, within PGA1_c13630at 1408.820 kb on + strand, within PGA1_c13630at 1408.820 kb on + strand, within PGA1_c13630at 1408.828 kb on - strand, within PGA1_c13630at 1408.892 kb on - strand, within PGA1_c13630at 1408.892 kb on - strand, within PGA1_c13630at 1409.043 kb on + strandat 1409.043 kb on + strandat 1409.045 kb on + strandat 1409.045 kb on + strandat 1409.051 kb on - strandat 1409.053 kb on - strandat 1409.058 kb on - strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.075 kb on + strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.083 kb on - strandat 1409.092 kb on - strandat 1409.106 kb on - strandat 1409.166 kb on + strandat 1409.176 kb on + strand, within PGA1_c13640at 1409.176 kb on + strand, within PGA1_c13640at 1409.184 kb on - strand, within PGA1_c13640at 1409.205 kb on - strand, within PGA1_c13640at 1409.230 kb on - strand, within PGA1_c13640at 1409.235 kb on - strand, within PGA1_c13640at 1409.285 kb on - strand, within PGA1_c13640at 1409.305 kb on + strand, within PGA1_c13640at 1409.319 kb on + strand, within PGA1_c13640at 1409.319 kb on + strand, within PGA1_c13640at 1409.327 kb on - strand, within PGA1_c13640at 1409.327 kb on - strand, within PGA1_c13640at 1409.341 kb on - strand, within PGA1_c13640at 1409.354 kb on - strand, within PGA1_c13640at 1409.374 kb on + strand, within PGA1_c13640at 1409.392 kb on + strandat 1409.392 kb on + strandat 1409.400 kb on - strandat 1409.401 kb on + strandat 1409.401 kb on + strandat 1409.406 kb on + strandat 1409.409 kb on - strandat 1409.416 kb on + strandat 1409.416 kb on + strandat 1409.426 kb on - strandat 1409.455 kb on + strandat 1409.497 kb on + strand, within PGA1_c13650at 1409.530 kb on + strand, within PGA1_c13650at 1409.532 kb on - strand, within PGA1_c13650at 1409.543 kb on - strand, within PGA1_c13650at 1409.568 kb on - strand, within PGA1_c13650at 1409.578 kb on + strand, within PGA1_c13650at 1409.578 kb on + strand, within PGA1_c13650at 1409.586 kb on - strand, within PGA1_c13650at 1409.586 kb on - strand, within PGA1_c13650at 1409.638 kb on + strand, within PGA1_c13650at 1409.655 kb on - strand, within PGA1_c13650at 1409.689 kb on + strand, within PGA1_c13650at 1409.740 kb on - strand, within PGA1_c13650at 1409.749 kb on + strand, within PGA1_c13650at 1409.749 kb on + strand, within PGA1_c13650at 1409.749 kb on + strand, within PGA1_c13650at 1409.749 kb on + strand, within PGA1_c13650at 1409.757 kb on - strand, within PGA1_c13650at 1409.757 kb on - strand, within PGA1_c13650at 1409.757 kb on - strand, within PGA1_c13650at 1409.757 kb on - strand, within PGA1_c13650at 1409.757 kb on - strand, within PGA1_c13650at 1409.757 kb on - strand, within PGA1_c13650at 1409.757 kb on - strand, within PGA1_c13650at 1409.757 kb on - strand, within PGA1_c13650at 1409.770 kb on + strand, within PGA1_c13650at 1409.770 kb on + strand, within PGA1_c13650at 1409.770 kb on + strand, within PGA1_c13650at 1409.780 kb on - strand, within PGA1_c13650at 1409.788 kb on - strand, within PGA1_c13650at 1409.845 kb on + strand, within PGA1_c13650at 1409.869 kb on - strand, within PGA1_c13650at 1409.872 kb on - strand, within PGA1_c13650at 1409.894 kb on - strand, within PGA1_c13650at 1409.902 kb on + strand, within PGA1_c13650at 1409.910 kb on - strand, within PGA1_c13650at 1409.910 kb on - strand, within PGA1_c13650at 1409.912 kb on - strand, within PGA1_c13650at 1409.919 kb on - strand, within PGA1_c13650at 1409.968 kb on + strand, within PGA1_c13650at 1409.976 kb on - strand, within PGA1_c13650at 1409.986 kb on + strand, within PGA1_c13650at 1410.007 kb on + strand, within PGA1_c13650at 1410.032 kb on + strandat 1410.032 kb on + strandat 1410.032 kb on + strandat 1410.042 kb on + strandat 1410.050 kb on - strandat 1410.074 kb on + strandat 1410.074 kb on + strandat 1410.079 kb on + strandat 1410.079 kb on + strandat 1410.079 kb on + strandat 1410.082 kb on - strandat 1410.082 kb on - strandat 1410.087 kb on - strandat 1410.087 kb on - strandat 1410.087 kb on - strandat 1410.087 kb on - strandat 1410.088 kb on + strandat 1410.089 kb on + strandat 1410.096 kb on - strandat 1410.096 kb on - strandat 1410.134 kb on + strandat 1410.142 kb on - strand, within PGA1_c13660at 1410.153 kb on - strand, within PGA1_c13660at 1410.155 kb on + strand, within PGA1_c13660at 1410.155 kb on + strand, within PGA1_c13660at 1410.155 kb on + strand, within PGA1_c13660at 1410.155 kb on + strand, within PGA1_c13660at 1410.155 kb on + strand, within PGA1_c13660at 1410.155 kb on + strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.163 kb on - strand, within PGA1_c13660at 1410.272 kb on + strand, within PGA1_c13660at 1410.272 kb on - strand, within PGA1_c13660at 1410.277 kb on + strand, within PGA1_c13660at 1410.285 kb on - strand, within PGA1_c13660at 1410.344 kb on + strand, within PGA1_c13660at 1410.357 kb on + strand, within PGA1_c13660at 1410.373 kb on + strand, within PGA1_c13660at 1410.393 kb on + strand, within PGA1_c13660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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1,408,149 + -1.3
1,408,149 + +2.6
1,408,157 - -0.9
1,408,157 - -0.3
1,408,177 + +1.3
1,408,182 + -0.6
1,408,244 - -0.2
1,408,248 + +0.1
1,408,248 + -0.0
1,408,248 + -0.3
1,408,248 + -0.3
1,408,248 + -0.1
1,408,253 + -1.0
1,408,255 + +0.2
1,408,256 - +1.1
1,408,256 - +0.6
1,408,256 - +0.8
1,408,256 - +1.4
1,408,256 - -1.2
1,408,256 - -0.3
1,408,256 - +0.6
1,408,256 - -0.3
1,408,256 - -0.1
1,408,260 + +0.0
1,408,277 - PGA1_c13630 0.11 +0.1
1,408,283 - PGA1_c13630 0.11 +0.1
1,408,325 + PGA1_c13630 0.16 +0.4
1,408,325 + PGA1_c13630 0.16 -0.2
1,408,333 - PGA1_c13630 0.17 -0.2
1,408,357 - PGA1_c13630 0.19 -0.8
1,408,401 - PGA1_c13630 0.24 -0.4
1,408,403 - PGA1_c13630 0.24 +0.2
1,408,427 + PGA1_c13630 0.27 +0.3
1,408,427 + PGA1_c13630 0.27 -0.4
1,408,435 - PGA1_c13630 0.27 +1.6
1,408,435 - PGA1_c13630 0.27 -0.0
1,408,435 - PGA1_c13630 0.27 -1.0
1,408,435 - PGA1_c13630 0.27 -0.1
1,408,442 + PGA1_c13630 0.28 -0.3
1,408,442 + PGA1_c13630 0.28 -0.6
1,408,442 + PGA1_c13630 0.28 -1.2
1,408,442 + PGA1_c13630 0.28 +0.3
1,408,447 + PGA1_c13630 0.29 -0.4
1,408,450 - PGA1_c13630 0.29 +1.6
1,408,450 - PGA1_c13630 0.29 +0.6
1,408,450 - PGA1_c13630 0.29 -0.2
1,408,450 - PGA1_c13630 0.29 -1.3
1,408,477 - PGA1_c13630 0.32 +0.3
1,408,524 + PGA1_c13630 0.37 -1.3
1,408,553 - PGA1_c13630 0.40 +1.6
1,408,575 - PGA1_c13630 0.42 -0.5
1,408,621 - PGA1_c13630 0.47 -0.6
1,408,651 + PGA1_c13630 0.50 +0.8
1,408,659 - PGA1_c13630 0.51 -1.3
1,408,674 - PGA1_c13630 0.53 +0.8
1,408,701 + PGA1_c13630 0.55 +0.6
1,408,706 + PGA1_c13630 0.56 +0.1
1,408,711 + PGA1_c13630 0.57 -0.1
1,408,713 + PGA1_c13630 0.57 -0.0
1,408,714 - PGA1_c13630 0.57 +1.0
1,408,716 - PGA1_c13630 0.57 -0.6
1,408,719 - PGA1_c13630 0.57 -0.4
1,408,721 - PGA1_c13630 0.58 +0.9
1,408,749 + PGA1_c13630 0.61 -0.0
1,408,758 - PGA1_c13630 0.61 +0.6
1,408,775 - PGA1_c13630 0.63 -1.4
1,408,792 - PGA1_c13630 0.65 +1.8
1,408,815 + PGA1_c13630 0.68 +0.6
1,408,815 + PGA1_c13630 0.68 +0.2
1,408,820 + PGA1_c13630 0.68 +0.8
1,408,820 + PGA1_c13630 0.68 +0.0
1,408,820 + PGA1_c13630 0.68 +0.0
1,408,828 - PGA1_c13630 0.69 +0.6
1,408,892 - PGA1_c13630 0.76 -2.2
1,408,892 - PGA1_c13630 0.76 +0.3
1,409,043 + -2.3
1,409,043 + +0.1
1,409,045 + +1.0
1,409,045 + +1.3
1,409,051 - -0.6
1,409,053 - +0.4
1,409,058 - -0.2
1,409,075 + +1.1
1,409,075 + -0.8
1,409,075 + -0.4
1,409,075 + +0.8
1,409,075 + +0.1
1,409,075 + -1.6
1,409,075 + +1.1
1,409,075 + -1.0
1,409,075 + -2.0
1,409,075 + -1.0
1,409,075 + +0.9
1,409,083 - -0.2
1,409,083 - -0.3
1,409,083 - +1.6
1,409,083 - -0.4
1,409,083 - -0.9
1,409,083 - +2.1
1,409,083 - -0.1
1,409,083 - +0.8
1,409,083 - -0.1
1,409,083 - -0.0
1,409,083 - +0.6
1,409,083 - -0.7
1,409,083 - -0.0
1,409,083 - -0.0
1,409,083 - -0.9
1,409,083 - -0.2
1,409,083 - +1.0
1,409,083 - +0.2
1,409,092 - -1.0
1,409,106 - -0.3
1,409,166 + +0.0
1,409,176 + PGA1_c13640 0.11 -0.4
1,409,176 + PGA1_c13640 0.11 -0.3
1,409,184 - PGA1_c13640 0.14 +1.8
1,409,205 - PGA1_c13640 0.22 -0.4
1,409,230 - PGA1_c13640 0.32 +0.7
1,409,235 - PGA1_c13640 0.34 -2.3
1,409,285 - PGA1_c13640 0.53 +0.5
1,409,305 + PGA1_c13640 0.61 +1.7
1,409,319 + PGA1_c13640 0.66 -1.5
1,409,319 + PGA1_c13640 0.66 +2.6
1,409,327 - PGA1_c13640 0.69 +1.0
1,409,327 - PGA1_c13640 0.69 +0.3
1,409,341 - PGA1_c13640 0.74 +0.7
1,409,354 - PGA1_c13640 0.79 -0.9
1,409,374 + PGA1_c13640 0.87 -0.1
1,409,392 + +0.1
1,409,392 + -0.4
1,409,400 - -2.0
1,409,401 + -0.4
1,409,401 + -0.3
1,409,406 + +1.2
1,409,409 - +0.1
1,409,416 + -1.4
1,409,416 + -0.1
1,409,426 - -0.6
1,409,455 + +0.7
1,409,497 + PGA1_c13650 0.14 +1.7
1,409,530 + PGA1_c13650 0.19 -0.4
1,409,532 - PGA1_c13650 0.19 +1.1
1,409,543 - PGA1_c13650 0.21 +0.1
1,409,568 - PGA1_c13650 0.25 -1.9
1,409,578 + PGA1_c13650 0.26 +0.4
1,409,578 + PGA1_c13650 0.26 +0.6
1,409,586 - PGA1_c13650 0.27 +2.9
1,409,586 - PGA1_c13650 0.27 +1.6
1,409,638 + PGA1_c13650 0.35 +1.6
1,409,655 - PGA1_c13650 0.37 -1.0
1,409,689 + PGA1_c13650 0.42 -1.4
1,409,740 - PGA1_c13650 0.50 -0.9
1,409,749 + PGA1_c13650 0.51 -0.5
1,409,749 + PGA1_c13650 0.51 -0.9
1,409,749 + PGA1_c13650 0.51 -0.1
1,409,749 + PGA1_c13650 0.51 +0.6
1,409,757 - PGA1_c13650 0.52 +0.1
1,409,757 - PGA1_c13650 0.52 -1.0
1,409,757 - PGA1_c13650 0.52 +0.8
1,409,757 - PGA1_c13650 0.52 -0.8
1,409,757 - PGA1_c13650 0.52 +0.7
1,409,757 - PGA1_c13650 0.52 -0.4
1,409,757 - PGA1_c13650 0.52 +1.0
1,409,757 - PGA1_c13650 0.52 -0.2
1,409,770 + PGA1_c13650 0.54 +0.3
1,409,770 + PGA1_c13650 0.54 +0.2
1,409,770 + PGA1_c13650 0.54 -0.9
1,409,780 - PGA1_c13650 0.56 +1.1
1,409,788 - PGA1_c13650 0.57 +0.6
1,409,845 + PGA1_c13650 0.65 -0.9
1,409,869 - PGA1_c13650 0.69 -0.0
1,409,872 - PGA1_c13650 0.69 +0.5
1,409,894 - PGA1_c13650 0.73 +0.4
1,409,902 + PGA1_c13650 0.74 +0.6
1,409,910 - PGA1_c13650 0.75 +1.1
1,409,910 - PGA1_c13650 0.75 -0.1
1,409,912 - PGA1_c13650 0.75 -0.3
1,409,919 - PGA1_c13650 0.76 +1.6
1,409,968 + PGA1_c13650 0.83 -0.0
1,409,976 - PGA1_c13650 0.85 -2.9
1,409,986 + PGA1_c13650 0.86 -0.4
1,410,007 + PGA1_c13650 0.89 +0.9
1,410,032 + -0.0
1,410,032 + +0.1
1,410,032 + +0.1
1,410,042 + +1.4
1,410,050 - +0.6
1,410,074 + -0.7
1,410,074 + +1.6
1,410,079 + +0.8
1,410,079 + +0.2
1,410,079 + -1.0
1,410,082 - -0.2
1,410,082 - +1.1
1,410,087 - -0.7
1,410,087 - +0.2
1,410,087 - -1.4
1,410,087 - +0.5
1,410,088 + -0.3
1,410,089 + -0.7
1,410,096 - +1.2
1,410,096 - -0.9
1,410,134 + +0.2
1,410,142 - PGA1_c13660 0.11 +0.1
1,410,153 - PGA1_c13660 0.13 +0.7
1,410,155 + PGA1_c13660 0.13 -0.8
1,410,155 + PGA1_c13660 0.13 +1.1
1,410,155 + PGA1_c13660 0.13 +0.4
1,410,155 + PGA1_c13660 0.13 +0.4
1,410,155 + PGA1_c13660 0.13 -0.0
1,410,155 + PGA1_c13660 0.13 -1.0
1,410,163 - PGA1_c13660 0.15 +1.7
1,410,163 - PGA1_c13660 0.15 +0.6
1,410,163 - PGA1_c13660 0.15 +0.6
1,410,163 - PGA1_c13660 0.15 +0.3
1,410,163 - PGA1_c13660 0.15 +0.6
1,410,163 - PGA1_c13660 0.15 -0.2
1,410,163 - PGA1_c13660 0.15 +0.5
1,410,163 - PGA1_c13660 0.15 +0.2
1,410,163 - PGA1_c13660 0.15 -0.2
1,410,272 + PGA1_c13660 0.35 +1.3
1,410,272 - PGA1_c13660 0.35 -0.4
1,410,277 + PGA1_c13660 0.36 +0.7
1,410,285 - PGA1_c13660 0.38 +0.9
1,410,344 + PGA1_c13660 0.49 +0.6
1,410,357 + PGA1_c13660 0.51 +0.5
1,410,373 + PGA1_c13660 0.54 -0.7
1,410,393 + PGA1_c13660 0.58 +0.3

Or see this region's nucleotide sequence