Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11170

Experiment: m.b. Zinc 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c11160 and PGA1_c11170 overlap by 8 nucleotidesPGA1_c11170 and PGA1_c11180 overlap by 1 nucleotidesPGA1_c11180 and PGA1_c11190 are separated by 103 nucleotides PGA1_c11160: PGA1_c11160 - putative beta-hexosaminidase, at 1,154,406 to 1,155,410 _c11160 PGA1_c11170: PGA1_c11170 - segregation and condensation protein A, at 1,155,403 to 1,156,194 _c11170 PGA1_c11180: PGA1_c11180 - segregation and condensation protein B, at 1,156,194 to 1,156,856 _c11180 PGA1_c11190: PGA1_c11190 - hypothetical protein, at 1,156,960 to 1,157,172 _c11190 Position (kb) 1155 1156 1157Strain fitness (log2 ratio) -2 -1 0 1at 1154.416 kb on - strandat 1154.416 kb on - strandat 1154.486 kb on + strandat 1154.488 kb on - strandat 1154.536 kb on + strand, within PGA1_c11160at 1154.548 kb on + strand, within PGA1_c11160at 1154.548 kb on + strand, within PGA1_c11160at 1154.556 kb on - strand, within PGA1_c11160at 1154.588 kb on - strand, within PGA1_c11160at 1154.829 kb on + strand, within PGA1_c11160at 1154.873 kb on - strand, within PGA1_c11160at 1154.873 kb on - strand, within PGA1_c11160at 1154.924 kb on - strand, within PGA1_c11160at 1155.077 kb on + strand, within PGA1_c11160at 1155.398 kb on + strandat 1155.415 kb on + strandat 1155.417 kb on + strandat 1155.839 kb on - strand, within PGA1_c11170at 1156.024 kb on - strand, within PGA1_c11170at 1156.060 kb on - strand, within PGA1_c11170at 1156.084 kb on + strand, within PGA1_c11170at 1156.208 kb on + strandat 1156.230 kb on + strandat 1156.447 kb on + strand, within PGA1_c11180at 1156.544 kb on + strand, within PGA1_c11180at 1156.590 kb on - strand, within PGA1_c11180at 1156.834 kb on + strandat 1156.929 kb on - strandat 1156.929 kb on - strandat 1156.988 kb on - strand, within PGA1_c11190at 1156.990 kb on - strand, within PGA1_c11190at 1156.999 kb on + strand, within PGA1_c11190at 1157.037 kb on + strand, within PGA1_c11190at 1157.037 kb on + strand, within PGA1_c11190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
remove
1,154,416 - -0.1
1,154,416 - +0.3
1,154,486 + +1.6
1,154,488 - -0.7
1,154,536 + PGA1_c11160 0.13 -0.7
1,154,548 + PGA1_c11160 0.14 -1.9
1,154,548 + PGA1_c11160 0.14 +0.4
1,154,556 - PGA1_c11160 0.15 -0.4
1,154,588 - PGA1_c11160 0.18 +0.3
1,154,829 + PGA1_c11160 0.42 -1.3
1,154,873 - PGA1_c11160 0.46 +0.6
1,154,873 - PGA1_c11160 0.46 -0.6
1,154,924 - PGA1_c11160 0.52 +0.8
1,155,077 + PGA1_c11160 0.67 +0.2
1,155,398 + +0.5
1,155,415 + -0.9
1,155,417 + +0.9
1,155,839 - PGA1_c11170 0.55 +0.8
1,156,024 - PGA1_c11170 0.78 +0.7
1,156,060 - PGA1_c11170 0.83 -0.6
1,156,084 + PGA1_c11170 0.86 +0.8
1,156,208 + +1.4
1,156,230 + +0.2
1,156,447 + PGA1_c11180 0.38 -0.4
1,156,544 + PGA1_c11180 0.53 -0.1
1,156,590 - PGA1_c11180 0.60 -0.4
1,156,834 + -1.7
1,156,929 - -2.2
1,156,929 - -0.9
1,156,988 - PGA1_c11190 0.13 +0.4
1,156,990 - PGA1_c11190 0.14 +0.3
1,156,999 + PGA1_c11190 0.18 +0.6
1,157,037 + PGA1_c11190 0.36 -0.7
1,157,037 + PGA1_c11190 0.36 -0.1

Or see this region's nucleotide sequence