Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11160 and PGA1_c11170 overlap by 8 nucleotides PGA1_c11170 and PGA1_c11180 overlap by 1 nucleotides PGA1_c11180 and PGA1_c11190 are separated by 103 nucleotides
PGA1_c11160: PGA1_c11160 - putative beta-hexosaminidase, at 1,154,406 to 1,155,410
_c11160
PGA1_c11170: PGA1_c11170 - segregation and condensation protein A, at 1,155,403 to 1,156,194
_c11170
PGA1_c11180: PGA1_c11180 - segregation and condensation protein B, at 1,156,194 to 1,156,856
_c11180
PGA1_c11190: PGA1_c11190 - hypothetical protein, at 1,156,960 to 1,157,172
_c11190
Position (kb)
1155
1156
1157 Strain fitness (log2 ratio)
-2
-1
0
1 at 1154.416 kb on - strand at 1154.416 kb on - strand at 1154.486 kb on + strand at 1154.488 kb on - strand at 1154.536 kb on + strand, within PGA1_c11160 at 1154.548 kb on + strand, within PGA1_c11160 at 1154.548 kb on + strand, within PGA1_c11160 at 1154.556 kb on - strand, within PGA1_c11160 at 1154.588 kb on - strand, within PGA1_c11160 at 1154.829 kb on + strand, within PGA1_c11160 at 1154.873 kb on - strand, within PGA1_c11160 at 1154.873 kb on - strand, within PGA1_c11160 at 1154.924 kb on - strand, within PGA1_c11160 at 1155.077 kb on + strand, within PGA1_c11160 at 1155.398 kb on + strand at 1155.415 kb on + strand at 1155.417 kb on + strand at 1155.839 kb on - strand, within PGA1_c11170 at 1156.024 kb on - strand, within PGA1_c11170 at 1156.060 kb on - strand, within PGA1_c11170 at 1156.084 kb on + strand, within PGA1_c11170 at 1156.208 kb on + strand at 1156.230 kb on + strand at 1156.447 kb on + strand, within PGA1_c11180 at 1156.544 kb on + strand, within PGA1_c11180 at 1156.590 kb on - strand, within PGA1_c11180 at 1156.834 kb on + strand at 1156.929 kb on - strand at 1156.929 kb on - strand at 1156.988 kb on - strand, within PGA1_c11190 at 1156.990 kb on - strand, within PGA1_c11190 at 1156.999 kb on + strand, within PGA1_c11190 at 1157.037 kb on + strand, within PGA1_c11190 at 1157.037 kb on + strand, within PGA1_c11190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 1,154,416 - -0.1 1,154,416 - +0.3 1,154,486 + +1.6 1,154,488 - -0.7 1,154,536 + PGA1_c11160 0.13 -0.7 1,154,548 + PGA1_c11160 0.14 -1.9 1,154,548 + PGA1_c11160 0.14 +0.4 1,154,556 - PGA1_c11160 0.15 -0.4 1,154,588 - PGA1_c11160 0.18 +0.3 1,154,829 + PGA1_c11160 0.42 -1.3 1,154,873 - PGA1_c11160 0.46 +0.6 1,154,873 - PGA1_c11160 0.46 -0.6 1,154,924 - PGA1_c11160 0.52 +0.8 1,155,077 + PGA1_c11160 0.67 +0.2 1,155,398 + +0.5 1,155,415 + -0.9 1,155,417 + +0.9 1,155,839 - PGA1_c11170 0.55 +0.8 1,156,024 - PGA1_c11170 0.78 +0.7 1,156,060 - PGA1_c11170 0.83 -0.6 1,156,084 + PGA1_c11170 0.86 +0.8 1,156,208 + +1.4 1,156,230 + +0.2 1,156,447 + PGA1_c11180 0.38 -0.4 1,156,544 + PGA1_c11180 0.53 -0.1 1,156,590 - PGA1_c11180 0.60 -0.4 1,156,834 + -1.7 1,156,929 - -2.2 1,156,929 - -0.9 1,156,988 - PGA1_c11190 0.13 +0.4 1,156,990 - PGA1_c11190 0.14 +0.3 1,156,999 + PGA1_c11190 0.18 +0.6 1,157,037 + PGA1_c11190 0.36 -0.7 1,157,037 + PGA1_c11190 0.36 -0.1
Or see this region's nucleotide sequence