Strain Fitness in Marinobacter adhaerens HP15 around HP15_1065

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1063 and HP15_1064 overlap by 4 nucleotidesHP15_1064 and HP15_1065 are separated by 82 nucleotidesHP15_1065 and HP15_1066 are separated by 136 nucleotides HP15_1063: HP15_1063 - protein containing DUF1315, at 1,087,567 to 1,087,857 _1063 HP15_1064: HP15_1064 - conserved hypothetical protein, at 1,087,854 to 1,088,693 _1064 HP15_1065: HP15_1065 - aminopeptidase N, at 1,088,776 to 1,091,418 _1065 HP15_1066: HP15_1066 - secreted protein containing DUF1329, at 1,091,555 to 1,092,943 _1066 Position (kb) 1088 1089 1090 1091 1092Strain fitness (log2 ratio) -2 -1 0 1 2at 1087.808 kb on - strand, within HP15_1063at 1087.851 kb on + strandat 1087.935 kb on - strandat 1088.184 kb on + strand, within HP15_1064at 1088.473 kb on - strand, within HP15_1064at 1088.511 kb on + strand, within HP15_1064at 1088.516 kb on + strand, within HP15_1064at 1088.534 kb on - strand, within HP15_1064at 1088.549 kb on - strand, within HP15_1064at 1088.554 kb on + strand, within HP15_1064at 1088.600 kb on - strand, within HP15_1064at 1088.607 kb on + strand, within HP15_1064at 1088.731 kb on - strandat 1088.798 kb on + strandat 1088.806 kb on - strandat 1088.835 kb on + strandat 1088.843 kb on + strandat 1088.843 kb on + strandat 1088.966 kb on - strandat 1088.995 kb on + strandat 1089.096 kb on + strand, within HP15_1065at 1089.096 kb on + strand, within HP15_1065at 1089.138 kb on + strand, within HP15_1065at 1089.146 kb on - strand, within HP15_1065at 1089.436 kb on + strand, within HP15_1065at 1089.520 kb on + strand, within HP15_1065at 1089.570 kb on + strand, within HP15_1065at 1089.594 kb on - strand, within HP15_1065at 1089.701 kb on + strand, within HP15_1065at 1089.743 kb on + strand, within HP15_1065at 1089.834 kb on + strand, within HP15_1065at 1089.834 kb on + strand, within HP15_1065at 1089.834 kb on + strand, within HP15_1065at 1089.915 kb on + strand, within HP15_1065at 1089.923 kb on - strand, within HP15_1065at 1089.985 kb on + strand, within HP15_1065at 1090.063 kb on + strand, within HP15_1065at 1090.168 kb on + strand, within HP15_1065at 1090.197 kb on - strand, within HP15_1065at 1090.208 kb on + strand, within HP15_1065at 1090.231 kb on + strand, within HP15_1065at 1090.331 kb on + strand, within HP15_1065at 1090.339 kb on - strand, within HP15_1065at 1090.380 kb on + strand, within HP15_1065at 1090.480 kb on - strand, within HP15_1065at 1090.504 kb on - strand, within HP15_1065at 1090.581 kb on + strand, within HP15_1065at 1090.717 kb on + strand, within HP15_1065at 1090.829 kb on + strand, within HP15_1065at 1090.849 kb on + strand, within HP15_1065at 1090.854 kb on + strand, within HP15_1065at 1090.893 kb on - strand, within HP15_1065at 1090.908 kb on + strand, within HP15_1065at 1090.931 kb on - strand, within HP15_1065at 1091.035 kb on - strand, within HP15_1065at 1091.036 kb on - strand, within HP15_1065at 1091.095 kb on + strand, within HP15_1065at 1091.097 kb on + strand, within HP15_1065at 1091.215 kb on - strandat 1091.243 kb on + strandat 1091.371 kb on - strandat 1091.381 kb on - strandat 1091.393 kb on - strandat 1091.395 kb on + strandat 1091.395 kb on + strandat 1091.403 kb on - strandat 1091.525 kb on - strandat 1091.547 kb on - strandat 1091.673 kb on + strandat 1091.900 kb on - strand, within HP15_1066at 1091.922 kb on - strand, within HP15_1066at 1092.224 kb on + strand, within HP15_1066at 1092.227 kb on - strand, within HP15_1066at 1092.301 kb on - strand, within HP15_1066at 1092.309 kb on + strand, within HP15_1066at 1092.377 kb on + strand, within HP15_1066at 1092.378 kb on + strand, within HP15_1066

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,087,808 - HP15_1063 0.83 -0.5
1,087,851 + +0.4
1,087,935 - -0.4
1,088,184 + HP15_1064 0.39 +0.6
1,088,473 - HP15_1064 0.74 -0.0
1,088,511 + HP15_1064 0.78 +0.3
1,088,516 + HP15_1064 0.79 -0.1
1,088,534 - HP15_1064 0.81 +0.0
1,088,549 - HP15_1064 0.83 +1.1
1,088,554 + HP15_1064 0.83 -0.2
1,088,600 - HP15_1064 0.89 +0.1
1,088,607 + HP15_1064 0.90 -0.5
1,088,731 - +0.1
1,088,798 + +0.8
1,088,806 - -0.6
1,088,835 + +0.0
1,088,843 + +0.2
1,088,843 + +1.3
1,088,966 - -0.5
1,088,995 + -1.4
1,089,096 + HP15_1065 0.12 +1.8
1,089,096 + HP15_1065 0.12 -1.8
1,089,138 + HP15_1065 0.14 +1.1
1,089,146 - HP15_1065 0.14 -0.0
1,089,436 + HP15_1065 0.25 +0.6
1,089,520 + HP15_1065 0.28 +1.3
1,089,570 + HP15_1065 0.30 +1.5
1,089,594 - HP15_1065 0.31 +1.1
1,089,701 + HP15_1065 0.35 -0.1
1,089,743 + HP15_1065 0.37 +0.3
1,089,834 + HP15_1065 0.40 +0.1
1,089,834 + HP15_1065 0.40 +0.7
1,089,834 + HP15_1065 0.40 +0.3
1,089,915 + HP15_1065 0.43 -0.0
1,089,923 - HP15_1065 0.43 -1.2
1,089,985 + HP15_1065 0.46 +1.0
1,090,063 + HP15_1065 0.49 +1.0
1,090,168 + HP15_1065 0.53 +1.2
1,090,197 - HP15_1065 0.54 +1.0
1,090,208 + HP15_1065 0.54 +0.6
1,090,231 + HP15_1065 0.55 -1.8
1,090,331 + HP15_1065 0.59 -0.0
1,090,339 - HP15_1065 0.59 +1.5
1,090,380 + HP15_1065 0.61 -0.4
1,090,480 - HP15_1065 0.64 +0.8
1,090,504 - HP15_1065 0.65 +1.3
1,090,581 + HP15_1065 0.68 +0.3
1,090,717 + HP15_1065 0.73 +0.6
1,090,829 + HP15_1065 0.78 +0.3
1,090,849 + HP15_1065 0.78 +0.6
1,090,854 + HP15_1065 0.79 +0.4
1,090,893 - HP15_1065 0.80 +0.5
1,090,908 + HP15_1065 0.81 +0.4
1,090,931 - HP15_1065 0.82 -0.6
1,091,035 - HP15_1065 0.85 -0.0
1,091,036 - HP15_1065 0.86 +0.2
1,091,095 + HP15_1065 0.88 -0.2
1,091,097 + HP15_1065 0.88 -0.0
1,091,215 - -0.0
1,091,243 + +0.2
1,091,371 - +1.8
1,091,381 - +0.6
1,091,393 - +0.2
1,091,395 + -0.0
1,091,395 + +0.2
1,091,403 - +1.1
1,091,525 - +1.4
1,091,547 - -1.8
1,091,673 + +0.7
1,091,900 - HP15_1066 0.25 +0.8
1,091,922 - HP15_1066 0.26 -0.8
1,092,224 + HP15_1066 0.48 +0.9
1,092,227 - HP15_1066 0.48 +1.2
1,092,301 - HP15_1066 0.54 -0.1
1,092,309 + HP15_1066 0.54 -0.2
1,092,377 + HP15_1066 0.59 +0.8
1,092,378 + HP15_1066 0.59 -0.2

Or see this region's nucleotide sequence