Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10830

Experiment: m.b. Zinc 0.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c10820 and PGA1_c10830 are separated by 567 nucleotidesPGA1_c10830 and PGA1_c10840 are separated by 40 nucleotides PGA1_c10820: PGA1_c10820 - hypothetical protein, at 1,117,647 to 1,118,351 _c10820 PGA1_c10830: PGA1_c10830 - colicin V production protein-like protein, at 1,118,919 to 1,119,473 _c10830 PGA1_c10840: PGA1_c10840 - DNA repair protein RadA, at 1,119,514 to 1,120,878 _c10840 Position (kb) 1118 1119 1120Strain fitness (log2 ratio) -2 -1 0 1 2at 1118.099 kb on - strand, within PGA1_c10820at 1118.107 kb on + strand, within PGA1_c10820at 1118.121 kb on + strand, within PGA1_c10820at 1118.139 kb on + strand, within PGA1_c10820at 1118.236 kb on - strand, within PGA1_c10820at 1118.259 kb on + strand, within PGA1_c10820at 1118.259 kb on + strand, within PGA1_c10820at 1118.275 kb on - strand, within PGA1_c10820at 1118.361 kb on - strandat 1118.418 kb on + strandat 1118.453 kb on + strandat 1118.463 kb on + strandat 1118.479 kb on + strandat 1118.483 kb on + strandat 1118.674 kb on - strandat 1118.729 kb on - strandat 1118.730 kb on + strandat 1118.737 kb on - strandat 1118.778 kb on + strandat 1118.778 kb on + strandat 1118.778 kb on + strandat 1118.778 kb on + strandat 1118.786 kb on - strandat 1118.852 kb on + strandat 1118.860 kb on - strandat 1118.884 kb on + strandat 1118.884 kb on + strandat 1118.887 kb on - strandat 1118.942 kb on + strandat 1119.057 kb on + strand, within PGA1_c10830at 1119.157 kb on - strand, within PGA1_c10830at 1119.179 kb on - strand, within PGA1_c10830at 1119.195 kb on - strand, within PGA1_c10830at 1119.215 kb on - strand, within PGA1_c10830at 1119.273 kb on + strand, within PGA1_c10830at 1119.294 kb on + strand, within PGA1_c10830at 1119.350 kb on - strand, within PGA1_c10830at 1119.438 kb on + strandat 1119.459 kb on + strandat 1119.466 kb on + strandat 1119.519 kb on - strandat 1119.519 kb on - strandat 1119.519 kb on - strandat 1119.529 kb on - strandat 1119.552 kb on + strandat 1119.560 kb on - strandat 1119.560 kb on - strandat 1119.679 kb on - strand, within PGA1_c10840at 1119.681 kb on + strand, within PGA1_c10840at 1119.683 kb on + strand, within PGA1_c10840at 1119.714 kb on - strand, within PGA1_c10840at 1119.744 kb on - strand, within PGA1_c10840at 1119.813 kb on + strand, within PGA1_c10840at 1119.833 kb on - strand, within PGA1_c10840at 1119.909 kb on - strand, within PGA1_c10840at 1119.914 kb on - strand, within PGA1_c10840at 1119.969 kb on - strand, within PGA1_c10840at 1120.036 kb on + strand, within PGA1_c10840at 1120.051 kb on + strand, within PGA1_c10840at 1120.059 kb on - strand, within PGA1_c10840at 1120.120 kb on + strand, within PGA1_c10840at 1120.120 kb on + strand, within PGA1_c10840at 1120.203 kb on + strand, within PGA1_c10840at 1120.211 kb on - strand, within PGA1_c10840at 1120.244 kb on + strand, within PGA1_c10840at 1120.354 kb on + strand, within PGA1_c10840at 1120.441 kb on + strand, within PGA1_c10840at 1120.469 kb on - strand, within PGA1_c10840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
remove
1,118,099 - PGA1_c10820 0.64 -1.6
1,118,107 + PGA1_c10820 0.65 +0.3
1,118,121 + PGA1_c10820 0.67 +1.4
1,118,139 + PGA1_c10820 0.70 +1.7
1,118,236 - PGA1_c10820 0.84 +0.5
1,118,259 + PGA1_c10820 0.87 -0.8
1,118,259 + PGA1_c10820 0.87 -1.9
1,118,275 - PGA1_c10820 0.89 +1.2
1,118,361 - -0.6
1,118,418 + -0.9
1,118,453 + -0.7
1,118,463 + -0.2
1,118,479 + -0.3
1,118,483 + +0.2
1,118,674 - +0.4
1,118,729 - +0.2
1,118,730 + +0.9
1,118,737 - +2.1
1,118,778 + +0.3
1,118,778 + -0.4
1,118,778 + +0.2
1,118,778 + -0.1
1,118,786 - +1.2
1,118,852 + -0.4
1,118,860 - +0.5
1,118,884 + -0.1
1,118,884 + -0.4
1,118,887 - -0.9
1,118,942 + +0.2
1,119,057 + PGA1_c10830 0.25 +1.1
1,119,157 - PGA1_c10830 0.43 -0.1
1,119,179 - PGA1_c10830 0.47 +0.2
1,119,195 - PGA1_c10830 0.50 +1.8
1,119,215 - PGA1_c10830 0.53 +0.4
1,119,273 + PGA1_c10830 0.64 +1.1
1,119,294 + PGA1_c10830 0.68 -0.4
1,119,350 - PGA1_c10830 0.78 -0.3
1,119,438 + +0.0
1,119,459 + -0.4
1,119,466 + +1.2
1,119,519 - +0.9
1,119,519 - -1.4
1,119,519 - -0.6
1,119,529 - -0.8
1,119,552 + +0.6
1,119,560 - -0.4
1,119,560 - -2.4
1,119,679 - PGA1_c10840 0.12 -0.7
1,119,681 + PGA1_c10840 0.12 +1.3
1,119,683 + PGA1_c10840 0.12 +0.0
1,119,714 - PGA1_c10840 0.15 -0.4
1,119,744 - PGA1_c10840 0.17 +1.0
1,119,813 + PGA1_c10840 0.22 +0.6
1,119,833 - PGA1_c10840 0.23 +0.0
1,119,909 - PGA1_c10840 0.29 -0.5
1,119,914 - PGA1_c10840 0.29 +0.6
1,119,969 - PGA1_c10840 0.33 +0.8
1,120,036 + PGA1_c10840 0.38 -0.7
1,120,051 + PGA1_c10840 0.39 -0.7
1,120,059 - PGA1_c10840 0.40 -0.8
1,120,120 + PGA1_c10840 0.44 +2.4
1,120,120 + PGA1_c10840 0.44 +0.6
1,120,203 + PGA1_c10840 0.50 -1.0
1,120,211 - PGA1_c10840 0.51 +0.6
1,120,244 + PGA1_c10840 0.53 +0.6
1,120,354 + PGA1_c10840 0.62 +0.9
1,120,441 + PGA1_c10840 0.68 +0.6
1,120,469 - PGA1_c10840 0.70 +1.4

Or see this region's nucleotide sequence