Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10770

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10750 and PGA1_c10760 are separated by 136 nucleotidesPGA1_c10760 and PGA1_c10770 overlap by 4 nucleotidesPGA1_c10770 and PGA1_c10780 are separated by 281 nucleotides PGA1_c10750: PGA1_c10750 - putative peptidoglycan binding peptidase, at 1,110,958 to 1,112,184 _c10750 PGA1_c10760: PGA1_c10760 - protein-L-isoaspartate O-methyltransferase Pcm, at 1,112,321 to 1,112,968 _c10760 PGA1_c10770: PGA1_c10770 - 5'-nucleotidase SurE, at 1,112,965 to 1,113,747 _c10770 PGA1_c10780: PGA1_c10780 - putative short chain dehydrogenase, at 1,114,029 to 1,114,682 _c10780 Position (kb) 1112 1113 1114Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1112.239 kb on - strandat 1112.291 kb on + strandat 1112.291 kb on + strandat 1112.299 kb on - strandat 1112.306 kb on + strandat 1112.309 kb on - strandat 1112.309 kb on - strandat 1112.314 kb on - strandat 1112.314 kb on - strandat 1112.318 kb on + strandat 1112.318 kb on + strandat 1112.829 kb on - strand, within PGA1_c10760at 1112.983 kb on - strandat 1113.044 kb on + strand, within PGA1_c10770at 1113.070 kb on - strand, within PGA1_c10770at 1113.141 kb on - strand, within PGA1_c10770at 1113.141 kb on - strand, within PGA1_c10770at 1113.289 kb on + strand, within PGA1_c10770at 1113.289 kb on + strand, within PGA1_c10770at 1113.297 kb on - strand, within PGA1_c10770at 1113.367 kb on - strand, within PGA1_c10770at 1113.396 kb on - strand, within PGA1_c10770at 1113.402 kb on + strand, within PGA1_c10770at 1113.402 kb on + strand, within PGA1_c10770at 1113.412 kb on + strand, within PGA1_c10770at 1113.412 kb on + strand, within PGA1_c10770at 1113.420 kb on - strand, within PGA1_c10770at 1113.420 kb on - strand, within PGA1_c10770at 1113.420 kb on - strand, within PGA1_c10770at 1113.451 kb on - strand, within PGA1_c10770at 1113.483 kb on - strand, within PGA1_c10770at 1113.520 kb on - strand, within PGA1_c10770at 1113.525 kb on - strand, within PGA1_c10770at 1113.652 kb on - strand, within PGA1_c10770at 1113.652 kb on - strand, within PGA1_c10770at 1113.652 kb on - strand, within PGA1_c10770at 1113.810 kb on + strandat 1113.868 kb on + strandat 1113.883 kb on + strandat 1113.905 kb on + strandat 1113.913 kb on - strandat 1113.954 kb on + strandat 1113.957 kb on - strandat 1114.720 kb on - strandat 1114.720 kb on - strandat 1114.720 kb on - strandat 1114.720 kb on - strandat 1114.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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1,112,239 - +0.1
1,112,291 + +0.0
1,112,291 + +0.1
1,112,299 - +0.3
1,112,306 + +0.3
1,112,309 - +1.9
1,112,309 - +0.0
1,112,314 - -0.5
1,112,314 - -0.2
1,112,318 + +1.0
1,112,318 + -0.5
1,112,829 - PGA1_c10760 0.78 +0.6
1,112,983 - +0.6
1,113,044 + PGA1_c10770 0.10 +0.7
1,113,070 - PGA1_c10770 0.13 -0.2
1,113,141 - PGA1_c10770 0.22 -1.0
1,113,141 - PGA1_c10770 0.22 +0.9
1,113,289 + PGA1_c10770 0.41 +0.2
1,113,289 + PGA1_c10770 0.41 -0.4
1,113,297 - PGA1_c10770 0.42 -3.3
1,113,367 - PGA1_c10770 0.51 -0.5
1,113,396 - PGA1_c10770 0.55 +1.5
1,113,402 + PGA1_c10770 0.56 +0.6
1,113,402 + PGA1_c10770 0.56 +0.2
1,113,412 + PGA1_c10770 0.57 +1.0
1,113,412 + PGA1_c10770 0.57 +0.1
1,113,420 - PGA1_c10770 0.58 +0.0
1,113,420 - PGA1_c10770 0.58 +1.0
1,113,420 - PGA1_c10770 0.58 -1.0
1,113,451 - PGA1_c10770 0.62 +2.3
1,113,483 - PGA1_c10770 0.66 +0.7
1,113,520 - PGA1_c10770 0.71 +1.7
1,113,525 - PGA1_c10770 0.72 -0.4
1,113,652 - PGA1_c10770 0.88 +0.6
1,113,652 - PGA1_c10770 0.88 +1.0
1,113,652 - PGA1_c10770 0.88 -1.0
1,113,810 + -1.5
1,113,868 + -0.9
1,113,883 + +1.5
1,113,905 + -1.6
1,113,913 - +0.6
1,113,954 + -0.6
1,113,957 - -0.3
1,114,720 - +0.3
1,114,720 - +1.2
1,114,720 - +0.6
1,114,720 - +0.3
1,114,728 - -0.5

Or see this region's nucleotide sequence