Experiment: m.b. Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10750 and PGA1_c10760 are separated by 136 nucleotides PGA1_c10760 and PGA1_c10770 overlap by 4 nucleotides PGA1_c10770 and PGA1_c10780 are separated by 281 nucleotides
PGA1_c10750: PGA1_c10750 - putative peptidoglycan binding peptidase, at 1,110,958 to 1,112,184
_c10750
PGA1_c10760: PGA1_c10760 - protein-L-isoaspartate O-methyltransferase Pcm, at 1,112,321 to 1,112,968
_c10760
PGA1_c10770: PGA1_c10770 - 5'-nucleotidase SurE, at 1,112,965 to 1,113,747
_c10770
PGA1_c10780: PGA1_c10780 - putative short chain dehydrogenase, at 1,114,029 to 1,114,682
_c10780
Position (kb)
1112
1113
1114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1112.239 kb on - strand at 1112.291 kb on + strand at 1112.291 kb on + strand at 1112.299 kb on - strand at 1112.306 kb on + strand at 1112.309 kb on - strand at 1112.309 kb on - strand at 1112.314 kb on - strand at 1112.314 kb on - strand at 1112.318 kb on + strand at 1112.318 kb on + strand at 1112.829 kb on - strand, within PGA1_c10760 at 1112.983 kb on - strand at 1113.044 kb on + strand, within PGA1_c10770 at 1113.070 kb on - strand, within PGA1_c10770 at 1113.141 kb on - strand, within PGA1_c10770 at 1113.141 kb on - strand, within PGA1_c10770 at 1113.289 kb on + strand, within PGA1_c10770 at 1113.289 kb on + strand, within PGA1_c10770 at 1113.297 kb on - strand, within PGA1_c10770 at 1113.367 kb on - strand, within PGA1_c10770 at 1113.396 kb on - strand, within PGA1_c10770 at 1113.402 kb on + strand, within PGA1_c10770 at 1113.402 kb on + strand, within PGA1_c10770 at 1113.412 kb on + strand, within PGA1_c10770 at 1113.412 kb on + strand, within PGA1_c10770 at 1113.420 kb on - strand, within PGA1_c10770 at 1113.420 kb on - strand, within PGA1_c10770 at 1113.420 kb on - strand, within PGA1_c10770 at 1113.451 kb on - strand, within PGA1_c10770 at 1113.483 kb on - strand, within PGA1_c10770 at 1113.520 kb on - strand, within PGA1_c10770 at 1113.525 kb on - strand, within PGA1_c10770 at 1113.652 kb on - strand, within PGA1_c10770 at 1113.652 kb on - strand, within PGA1_c10770 at 1113.652 kb on - strand, within PGA1_c10770 at 1113.810 kb on + strand at 1113.868 kb on + strand at 1113.883 kb on + strand at 1113.905 kb on + strand at 1113.913 kb on - strand at 1113.954 kb on + strand at 1113.957 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM remove 1,112,239 - +0.1 1,112,291 + +0.0 1,112,291 + +0.1 1,112,299 - +0.3 1,112,306 + +0.3 1,112,309 - +1.9 1,112,309 - +0.0 1,112,314 - -0.5 1,112,314 - -0.2 1,112,318 + +1.0 1,112,318 + -0.5 1,112,829 - PGA1_c10760 0.78 +0.6 1,112,983 - +0.6 1,113,044 + PGA1_c10770 0.10 +0.7 1,113,070 - PGA1_c10770 0.13 -0.2 1,113,141 - PGA1_c10770 0.22 -1.0 1,113,141 - PGA1_c10770 0.22 +0.9 1,113,289 + PGA1_c10770 0.41 +0.2 1,113,289 + PGA1_c10770 0.41 -0.4 1,113,297 - PGA1_c10770 0.42 -3.3 1,113,367 - PGA1_c10770 0.51 -0.5 1,113,396 - PGA1_c10770 0.55 +1.5 1,113,402 + PGA1_c10770 0.56 +0.6 1,113,402 + PGA1_c10770 0.56 +0.2 1,113,412 + PGA1_c10770 0.57 +1.0 1,113,412 + PGA1_c10770 0.57 +0.1 1,113,420 - PGA1_c10770 0.58 +0.0 1,113,420 - PGA1_c10770 0.58 +1.0 1,113,420 - PGA1_c10770 0.58 -1.0 1,113,451 - PGA1_c10770 0.62 +2.3 1,113,483 - PGA1_c10770 0.66 +0.7 1,113,520 - PGA1_c10770 0.71 +1.7 1,113,525 - PGA1_c10770 0.72 -0.4 1,113,652 - PGA1_c10770 0.88 +0.6 1,113,652 - PGA1_c10770 0.88 +1.0 1,113,652 - PGA1_c10770 0.88 -1.0 1,113,810 + -1.5 1,113,868 + -0.9 1,113,883 + +1.5 1,113,905 + -1.6 1,113,913 - +0.6 1,113,954 + -0.6 1,113,957 - -0.3 1,114,720 - +0.3 1,114,720 - +1.2 1,114,720 - +0.6 1,114,720 - +0.3 1,114,728 - -0.5
Or see this region's nucleotide sequence