Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10550

Experiment: m.b. Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10540 and PGA1_c10550 are separated by 13 nucleotidesPGA1_c10550 and PGA1_c10560 are separated by 70 nucleotidesPGA1_c10560 and PGA1_c10570 are separated by 15 nucleotides PGA1_c10540: PGA1_c10540 - NADH-quinone oxidoreductase subunit M, at 1,089,228 to 1,090,775 _c10540 PGA1_c10550: PGA1_c10550 - NADH-quinone oxidoreductase subunit N, at 1,090,789 to 1,092,228 _c10550 PGA1_c10560: PGA1_c10560 - biotin-[acetyl-CoA-carboxylase] synthetase BirA, at 1,092,299 to 1,093,048 _c10560 PGA1_c10570: PGA1_c10570 - type III pantothenate kinase CoaX, at 1,093,064 to 1,093,852 _c10570 Position (kb) 1090 1091 1092 1093Strain fitness (log2 ratio) -1 0 1at 1092.232 kb on + strandat 1092.240 kb on - strandat 1092.253 kb on + strandat 1092.253 kb on + strandat 1092.261 kb on - strandat 1092.294 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.1 mM
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1,092,232 + +0.3
1,092,240 - +0.6
1,092,253 + +0.2
1,092,253 + +0.3
1,092,261 - +0.4
1,092,294 + -0.6

Or see this region's nucleotide sequence