Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3535 and Dsui_3536 are separated by 101 nucleotides Dsui_3536 and Dsui_3537 are separated by 15 nucleotides Dsui_3537 and Dsui_3538 are separated by 8 nucleotides
Dsui_3535: Dsui_3535 - putative permease, at 3,800,343 to 3,801,428
_3535
Dsui_3536: Dsui_3536 - leucyl aminopeptidase, at 3,801,530 to 3,803,026
_3536
Dsui_3537: Dsui_3537 - DNA polymerase III, chi subunit, at 3,803,042 to 3,803,473
_3537
Dsui_3538: Dsui_3538 - hypothetical protein, at 3,803,482 to 3,803,961
_3538
Position (kb)
3801
3802
3803
3804 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3801.437 kb on - strand at 3801.613 kb on + strand at 3801.629 kb on + strand at 3801.682 kb on + strand, within Dsui_3536 at 3801.709 kb on + strand, within Dsui_3536 at 3801.751 kb on + strand, within Dsui_3536 at 3801.817 kb on + strand, within Dsui_3536 at 3801.837 kb on - strand, within Dsui_3536 at 3802.330 kb on + strand, within Dsui_3536 at 3802.429 kb on + strand, within Dsui_3536 at 3802.783 kb on + strand, within Dsui_3536 at 3802.807 kb on + strand, within Dsui_3536 at 3802.924 kb on + strand at 3803.020 kb on + strand at 3803.029 kb on - strand at 3803.458 kb on + strand at 3803.685 kb on - strand at 3803.805 kb on - strand at 3803.805 kb on - strand, within Dsui_3538 at 3803.822 kb on - strand, within Dsui_3538 at 3803.822 kb on - strand at 3803.950 kb on - strand at 3803.995 kb on + strand at 3804.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,801,437 - -2.1 3,801,613 + +1.6 3,801,629 + +0.8 3,801,682 + Dsui_3536 0.10 +1.5 3,801,709 + Dsui_3536 0.12 +1.8 3,801,751 + Dsui_3536 0.15 +1.9 3,801,817 + Dsui_3536 0.19 +2.2 3,801,837 - Dsui_3536 0.21 +0.7 3,802,330 + Dsui_3536 0.53 +1.7 3,802,429 + Dsui_3536 0.60 +1.9 3,802,783 + Dsui_3536 0.84 +1.9 3,802,807 + Dsui_3536 0.85 +1.5 3,802,924 + +1.5 3,803,020 + +0.6 3,803,029 - +0.7 3,803,458 + -0.0 3,803,685 - +0.7 3,803,805 - -0.3 3,803,805 - Dsui_3538 0.67 -1.3 3,803,822 - Dsui_3538 0.71 +0.7 3,803,822 - -0.3 3,803,950 - +0.7 3,803,995 + -0.0 3,804,024 + +0.9
Or see this region's nucleotide sequence