Strain Fitness in Dechlorosoma suillum PS around Dsui_3495

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3494 and Dsui_3495 are separated by 83 nucleotidesDsui_3495 and Dsui_3496 overlap by 1 nucleotidesDsui_3496 and Dsui_3497 are separated by 15 nucleotides Dsui_3494: Dsui_3494 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase, at 3,759,745 to 3,760,674 _3494 Dsui_3495: Dsui_3495 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,760,758 to 3,761,201 _3495 Dsui_3496: Dsui_3496 - sulfite oxidase-like oxidoreductase, at 3,761,201 to 3,761,761 _3496 Dsui_3497: Dsui_3497 - lipoprotein signal peptidase, at 3,761,777 to 3,762,277 _3497 Position (kb) 3760 3761 3762Strain fitness (log2 ratio) -1 0 1 2at 3761.125 kb on - strand, within Dsui_3495at 3761.179 kb on - strandat 3761.254 kb on + strandat 3761.327 kb on + strandat 3761.444 kb on + strand, within Dsui_3496at 3761.462 kb on + strandat 3761.539 kb on - strand, within Dsui_3496at 3761.539 kb on - strand, within Dsui_3496at 3761.545 kb on - strand, within Dsui_3496at 3761.551 kb on + strandat 3761.552 kb on + strand, within Dsui_3496at 3761.702 kb on + strand, within Dsui_3496

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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3,761,125 - Dsui_3495 0.83 +1.8
3,761,179 - +1.6
3,761,254 + +0.7
3,761,327 + +0.7
3,761,444 + Dsui_3496 0.43 -1.7
3,761,462 + +0.7
3,761,539 - Dsui_3496 0.60 -0.2
3,761,539 - Dsui_3496 0.60 -0.1
3,761,545 - Dsui_3496 0.61 -0.1
3,761,551 + +0.7
3,761,552 + Dsui_3496 0.63 -0.9
3,761,702 + Dsui_3496 0.89 -0.9

Or see this region's nucleotide sequence