Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3492 and Dsui_3493 are separated by 278 nucleotides Dsui_3493 and Dsui_3494 are separated by 1 nucleotides Dsui_3494 and Dsui_3495 are separated by 83 nucleotides Dsui_3495 and Dsui_3496 overlap by 1 nucleotides
Dsui_3492: Dsui_3492 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,755,518 to 3,759,021
_3492
Dsui_3493: Dsui_3493 - Gram-negative bacterial tonB protein, at 3,759,300 to 3,759,743
_3493
Dsui_3494: Dsui_3494 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase, at 3,759,745 to 3,760,674
_3494
Dsui_3495: Dsui_3495 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,760,758 to 3,761,201
_3495
Dsui_3496: Dsui_3496 - sulfite oxidase-like oxidoreductase, at 3,761,201 to 3,761,761
_3496
Position (kb)
3759
3760
3761 Strain fitness (log2 ratio)
-1
0
1
2 at 3758.762 kb on + strand at 3758.802 kb on - strand at 3758.888 kb on - strand at 3758.899 kb on + strand at 3759.085 kb on - strand at 3759.097 kb on + strand at 3759.128 kb on - strand at 3759.251 kb on - strand at 3759.263 kb on + strand at 3759.271 kb on - strand at 3759.271 kb on - strand at 3759.374 kb on - strand, within Dsui_3493 at 3759.445 kb on - strand, within Dsui_3493 at 3759.547 kb on + strand, within Dsui_3493 at 3759.547 kb on - strand, within Dsui_3493 at 3759.552 kb on - strand, within Dsui_3493 at 3759.565 kb on - strand, within Dsui_3493 at 3759.634 kb on - strand, within Dsui_3493 at 3759.675 kb on + strand, within Dsui_3493 at 3759.675 kb on + strand, within Dsui_3493 at 3761.125 kb on - strand, within Dsui_3495 at 3761.179 kb on - strand at 3761.254 kb on + strand at 3761.327 kb on + strand at 3761.444 kb on + strand, within Dsui_3496 at 3761.462 kb on + strand at 3761.539 kb on - strand, within Dsui_3496 at 3761.539 kb on - strand, within Dsui_3496 at 3761.545 kb on - strand, within Dsui_3496 at 3761.551 kb on + strand at 3761.552 kb on + strand, within Dsui_3496
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,758,762 + +0.3 3,758,802 - -0.3 3,758,888 - -0.9 3,758,899 + -0.5 3,759,085 - +0.7 3,759,097 + -0.1 3,759,128 - -0.9 3,759,251 - +0.8 3,759,263 + +0.2 3,759,271 - +0.7 3,759,271 - +0.5 3,759,374 - Dsui_3493 0.17 -0.5 3,759,445 - Dsui_3493 0.33 +0.0 3,759,547 + Dsui_3493 0.56 +1.0 3,759,547 - Dsui_3493 0.56 -0.0 3,759,552 - Dsui_3493 0.57 +0.2 3,759,565 - Dsui_3493 0.60 -0.3 3,759,634 - Dsui_3493 0.75 -0.3 3,759,675 + Dsui_3493 0.84 -0.1 3,759,675 + Dsui_3493 0.84 +0.5 3,761,125 - Dsui_3495 0.83 +1.8 3,761,179 - +1.6 3,761,254 + +0.7 3,761,327 + +0.7 3,761,444 + Dsui_3496 0.43 -1.7 3,761,462 + +0.7 3,761,539 - Dsui_3496 0.60 -0.2 3,761,539 - Dsui_3496 0.60 -0.1 3,761,545 - Dsui_3496 0.61 -0.1 3,761,551 + +0.7 3,761,552 + Dsui_3496 0.63 -0.9
Or see this region's nucleotide sequence