Strain Fitness in Dechlorosoma suillum PS around Dsui_3481

Experiment: ALP with Fusidic 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3480 and Dsui_3481 are separated by 165 nucleotidesDsui_3481 and Dsui_3482 are separated by 91 nucleotides Dsui_3480: Dsui_3480 - arabinose efflux permease family protein, at 3,743,297 to 3,744,646 _3480 Dsui_3481: Dsui_3481 - aspartate ammonia-lyase, at 3,744,812 to 3,746,230 _3481 Dsui_3482: Dsui_3482 - Na+/H+ dicarboxylate symporter, at 3,746,322 to 3,747,635 _3482 Position (kb) 3744 3745 3746 3747Strain fitness (log2 ratio) -3 -2 -1 0 1at 3744.576 kb on - strandat 3744.581 kb on - strandat 3744.606 kb on - strandat 3744.609 kb on - strandat 3744.791 kb on - strandat 3744.799 kb on - strandat 3744.804 kb on - strandat 3744.866 kb on + strandat 3744.885 kb on + strandat 3744.893 kb on - strandat 3744.893 kb on - strandat 3744.942 kb on + strandat 3744.942 kb on + strandat 3744.950 kb on - strandat 3744.950 kb on - strandat 3744.950 kb on - strandat 3744.952 kb on + strandat 3744.955 kb on - strand, within Dsui_3481at 3745.187 kb on + strand, within Dsui_3481at 3745.188 kb on - strand, within Dsui_3481at 3745.191 kb on + strand, within Dsui_3481at 3745.209 kb on - strand, within Dsui_3481at 3745.247 kb on - strand, within Dsui_3481at 3745.321 kb on - strand, within Dsui_3481at 3745.346 kb on - strandat 3745.348 kb on + strand, within Dsui_3481at 3745.348 kb on + strand, within Dsui_3481at 3745.394 kb on + strand, within Dsui_3481at 3745.428 kb on + strand, within Dsui_3481at 3745.542 kb on + strand, within Dsui_3481at 3745.555 kb on - strand, within Dsui_3481at 3745.607 kb on - strand, within Dsui_3481at 3745.627 kb on - strand, within Dsui_3481at 3745.635 kb on + strand, within Dsui_3481at 3745.681 kb on + strand, within Dsui_3481at 3745.713 kb on + strand, within Dsui_3481at 3745.721 kb on - strand, within Dsui_3481at 3745.827 kb on + strand, within Dsui_3481at 3745.882 kb on + strand, within Dsui_3481at 3745.914 kb on + strand, within Dsui_3481at 3745.932 kb on - strand, within Dsui_3481at 3745.956 kb on + strand, within Dsui_3481at 3746.056 kb on + strand, within Dsui_3481at 3746.491 kb on + strand, within Dsui_3482at 3746.501 kb on - strand, within Dsui_3482at 3746.694 kb on - strand, within Dsui_3482at 3746.721 kb on - strand, within Dsui_3482at 3746.721 kb on - strand, within Dsui_3482at 3746.867 kb on + strand, within Dsui_3482at 3747.015 kb on - strand, within Dsui_3482

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
remove
3,744,576 - +0.7
3,744,581 - +0.7
3,744,606 - +0.7
3,744,609 - -0.3
3,744,791 - +0.7
3,744,799 - +0.7
3,744,804 - -0.9
3,744,866 + -0.9
3,744,885 + -0.9
3,744,893 - -2.1
3,744,893 - +0.1
3,744,942 + -0.5
3,744,942 + -1.0
3,744,950 - +0.7
3,744,950 - -1.3
3,744,950 - +0.7
3,744,952 + -0.9
3,744,955 - Dsui_3481 0.10 -1.3
3,745,187 + Dsui_3481 0.26 -0.9
3,745,188 - Dsui_3481 0.26 -1.9
3,745,191 + Dsui_3481 0.27 -0.8
3,745,209 - Dsui_3481 0.28 -1.3
3,745,247 - Dsui_3481 0.31 -0.3
3,745,321 - Dsui_3481 0.36 -0.6
3,745,346 - +0.7
3,745,348 + Dsui_3481 0.38 -0.2
3,745,348 + Dsui_3481 0.38 -0.9
3,745,394 + Dsui_3481 0.41 -0.7
3,745,428 + Dsui_3481 0.43 +0.1
3,745,542 + Dsui_3481 0.51 -0.5
3,745,555 - Dsui_3481 0.52 -1.1
3,745,607 - Dsui_3481 0.56 -1.9
3,745,627 - Dsui_3481 0.57 +0.7
3,745,635 + Dsui_3481 0.58 -0.6
3,745,681 + Dsui_3481 0.61 -0.9
3,745,713 + Dsui_3481 0.63 -0.8
3,745,721 - Dsui_3481 0.64 -0.3
3,745,827 + Dsui_3481 0.72 +0.2
3,745,882 + Dsui_3481 0.75 -0.5
3,745,914 + Dsui_3481 0.78 -0.6
3,745,932 - Dsui_3481 0.79 +0.7
3,745,956 + Dsui_3481 0.81 +0.1
3,746,056 + Dsui_3481 0.88 -0.3
3,746,491 + Dsui_3482 0.13 -0.1
3,746,501 - Dsui_3482 0.14 +0.3
3,746,694 - Dsui_3482 0.28 -2.8
3,746,721 - Dsui_3482 0.30 -1.3
3,746,721 - Dsui_3482 0.30 +0.7
3,746,867 + Dsui_3482 0.41 -0.5
3,747,015 - Dsui_3482 0.53 +0.9

Or see this region's nucleotide sequence