Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3401 and Dsui_3402 are separated by 99 nucleotides Dsui_3402 and Dsui_3403 overlap by 20 nucleotides
Dsui_3401: Dsui_3401 - putative Zn-dependent protease-like protein, at 3,647,664 to 3,649,103
_3401
Dsui_3402: Dsui_3402 - putative amidohydrolase, at 3,649,203 to 3,650,036
_3402
Dsui_3403: Dsui_3403 - TIGR02099 family protein, at 3,650,017 to 3,653,994
_3403
Position (kb)
3649
3650
3651 Strain fitness (log2 ratio)
-2
-1
0
1 at 3648.349 kb on + strand at 3648.464 kb on - strand, within Dsui_3401 at 3648.500 kb on + strand at 3648.530 kb on - strand, within Dsui_3401 at 3648.636 kb on - strand, within Dsui_3401 at 3648.670 kb on + strand at 3648.670 kb on - strand, within Dsui_3401 at 3648.715 kb on - strand, within Dsui_3401 at 3648.737 kb on + strand, within Dsui_3401 at 3648.856 kb on + strand, within Dsui_3401 at 3648.906 kb on - strand, within Dsui_3401 at 3648.952 kb on - strand, within Dsui_3401 at 3648.970 kb on - strand at 3649.047 kb on - strand at 3649.062 kb on + strand at 3649.110 kb on + strand at 3649.111 kb on + strand at 3649.118 kb on - strand at 3649.118 kb on - strand at 3649.119 kb on - strand at 3649.143 kb on + strand at 3649.159 kb on + strand at 3649.159 kb on + strand at 3649.177 kb on - strand at 3649.181 kb on - strand at 3649.223 kb on - strand at 3649.272 kb on + strand at 3649.280 kb on - strand at 3649.280 kb on - strand at 3649.283 kb on + strand at 3649.318 kb on + strand at 3649.326 kb on - strand, within Dsui_3402 at 3649.540 kb on - strand, within Dsui_3402 at 3649.560 kb on + strand, within Dsui_3402 at 3649.568 kb on - strand, within Dsui_3402 at 3649.568 kb on - strand, within Dsui_3402 at 3649.634 kb on - strand, within Dsui_3402 at 3649.753 kb on - strand, within Dsui_3402 at 3649.771 kb on - strand, within Dsui_3402 at 3650.039 kb on + strand at 3650.039 kb on + strand at 3650.039 kb on + strand at 3650.096 kb on - strand at 3650.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,648,349 + +0.7 3,648,464 - Dsui_3401 0.56 +0.9 3,648,500 + +0.7 3,648,530 - Dsui_3401 0.60 +0.3 3,648,636 - Dsui_3401 0.68 +0.9 3,648,670 + +0.7 3,648,670 - Dsui_3401 0.70 +0.5 3,648,715 - Dsui_3401 0.73 +0.3 3,648,737 + Dsui_3401 0.75 -1.9 3,648,856 + Dsui_3401 0.83 -0.9 3,648,906 - Dsui_3401 0.86 +0.3 3,648,952 - Dsui_3401 0.89 +0.8 3,648,970 - -0.1 3,649,047 - +0.0 3,649,062 + +0.7 3,649,110 + +0.7 3,649,111 + +0.7 3,649,118 - +0.8 3,649,118 - -0.8 3,649,119 - +0.3 3,649,143 + -0.3 3,649,159 + +0.7 3,649,159 + -0.3 3,649,177 - +0.4 3,649,181 - -0.2 3,649,223 - -0.7 3,649,272 + -0.9 3,649,280 - -0.1 3,649,280 - -0.3 3,649,283 + -1.7 3,649,318 + +0.7 3,649,326 - Dsui_3402 0.15 +0.4 3,649,540 - Dsui_3402 0.40 +0.5 3,649,560 + Dsui_3402 0.43 -0.3 3,649,568 - Dsui_3402 0.44 +0.5 3,649,568 - Dsui_3402 0.44 -0.1 3,649,634 - Dsui_3402 0.52 -0.3 3,649,753 - Dsui_3402 0.66 -0.1 3,649,771 - Dsui_3402 0.68 +0.9 3,650,039 + +0.7 3,650,039 + -1.7 3,650,039 + -0.9 3,650,096 - -0.4 3,650,105 - -1.0
Or see this region's nucleotide sequence