Strain Fitness in Dechlorosoma suillum PS around Dsui_3235

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3233 and Dsui_3234 are separated by 69 nucleotidesDsui_3234 and Dsui_3235 are separated by 76 nucleotidesDsui_3235 and Dsui_3236 are separated by 151 nucleotides Dsui_3233: Dsui_3233 - hypothetical protein, at 3,475,283 to 3,475,750 _3233 Dsui_3234: Dsui_3234 - putative proteasome-type protease, at 3,475,820 to 3,476,548 _3234 Dsui_3235: Dsui_3235 - hypothetical protein, at 3,476,625 to 3,477,569 _3235 Dsui_3236: Dsui_3236 - hypothetical protein, at 3,477,721 to 3,479,136 _3236 Position (kb) 3476 3477 3478Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3475.665 kb on - strandat 3475.667 kb on + strand, within Dsui_3233at 3475.725 kb on - strandat 3475.766 kb on + strandat 3475.774 kb on - strandat 3475.831 kb on - strandat 3475.935 kb on + strand, within Dsui_3234at 3475.935 kb on + strand, within Dsui_3234at 3475.990 kb on + strand, within Dsui_3234at 3476.041 kb on + strand, within Dsui_3234at 3476.041 kb on + strandat 3476.041 kb on + strand, within Dsui_3234at 3476.042 kb on + strand, within Dsui_3234at 3476.130 kb on - strand, within Dsui_3234at 3476.169 kb on + strand, within Dsui_3234at 3476.184 kb on + strand, within Dsui_3234at 3476.308 kb on + strand, within Dsui_3234at 3476.316 kb on - strand, within Dsui_3234at 3476.410 kb on + strand, within Dsui_3234at 3476.421 kb on - strand, within Dsui_3234at 3476.433 kb on - strand, within Dsui_3234at 3476.437 kb on + strand, within Dsui_3234at 3476.437 kb on + strand, within Dsui_3234at 3476.443 kb on + strand, within Dsui_3234at 3476.460 kb on + strand, within Dsui_3234at 3476.468 kb on + strand, within Dsui_3234at 3476.468 kb on - strand, within Dsui_3234at 3476.470 kb on + strand, within Dsui_3234at 3476.471 kb on + strand, within Dsui_3234at 3476.479 kb on - strandat 3476.502 kb on + strandat 3476.544 kb on + strandat 3476.616 kb on - strandat 3476.651 kb on - strandat 3476.664 kb on - strandat 3476.674 kb on - strandat 3476.750 kb on - strand, within Dsui_3235at 3476.806 kb on + strandat 3476.827 kb on - strand, within Dsui_3235at 3476.854 kb on - strandat 3476.861 kb on - strand, within Dsui_3235at 3476.861 kb on - strand, within Dsui_3235at 3476.910 kb on + strand, within Dsui_3235at 3476.918 kb on - strand, within Dsui_3235at 3476.925 kb on + strand, within Dsui_3235at 3476.996 kb on - strand, within Dsui_3235at 3477.073 kb on - strand, within Dsui_3235at 3477.087 kb on + strand, within Dsui_3235at 3477.135 kb on + strand, within Dsui_3235at 3477.143 kb on - strand, within Dsui_3235at 3477.187 kb on + strand, within Dsui_3235at 3477.195 kb on - strand, within Dsui_3235at 3477.197 kb on + strand, within Dsui_3235at 3477.205 kb on - strand, within Dsui_3235at 3477.249 kb on - strand, within Dsui_3235at 3477.309 kb on + strand, within Dsui_3235at 3477.317 kb on - strand, within Dsui_3235at 3477.319 kb on + strand, within Dsui_3235at 3477.379 kb on + strand, within Dsui_3235at 3477.379 kb on + strand, within Dsui_3235at 3477.379 kb on + strand, within Dsui_3235at 3477.379 kb on + strand, within Dsui_3235at 3477.409 kb on - strand, within Dsui_3235at 3477.419 kb on + strand, within Dsui_3235at 3477.538 kb on + strandat 3477.538 kb on + strandat 3477.546 kb on - strandat 3477.566 kb on + strandat 3477.607 kb on - strandat 3477.686 kb on - strandat 3477.766 kb on + strandat 3477.789 kb on - strandat 3477.851 kb on - strandat 3477.866 kb on - strand, within Dsui_3236at 3477.913 kb on + strandat 3477.920 kb on - strand, within Dsui_3236at 3477.920 kb on - strand, within Dsui_3236at 3477.928 kb on + strand, within Dsui_3236at 3477.988 kb on + strand, within Dsui_3236at 3478.036 kb on - strand, within Dsui_3236at 3478.069 kb on + strand, within Dsui_3236at 3478.070 kb on + strand, within Dsui_3236at 3478.070 kb on + strand, within Dsui_3236at 3478.070 kb on + strand, within Dsui_3236at 3478.075 kb on + strand, within Dsui_3236at 3478.078 kb on - strandat 3478.286 kb on + strandat 3478.324 kb on + strand, within Dsui_3236at 3478.360 kb on + strandat 3478.360 kb on + strand, within Dsui_3236at 3478.368 kb on - strand, within Dsui_3236at 3478.368 kb on - strand, within Dsui_3236at 3478.397 kb on - strand, within Dsui_3236at 3478.434 kb on - strand, within Dsui_3236at 3478.487 kb on - strand, within Dsui_3236

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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3,475,665 - -0.9
3,475,667 + Dsui_3233 0.82 -0.6
3,475,725 - +0.7
3,475,766 + -0.7
3,475,774 - -0.9
3,475,831 - -0.3
3,475,935 + Dsui_3234 0.16 -0.3
3,475,935 + Dsui_3234 0.16 -2.6
3,475,990 + Dsui_3234 0.23 -2.5
3,476,041 + Dsui_3234 0.30 +0.7
3,476,041 + +0.7
3,476,041 + Dsui_3234 0.30 -0.3
3,476,042 + Dsui_3234 0.30 -0.3
3,476,130 - Dsui_3234 0.43 -1.9
3,476,169 + Dsui_3234 0.48 +0.7
3,476,184 + Dsui_3234 0.50 -1.6
3,476,308 + Dsui_3234 0.67 -0.3
3,476,316 - Dsui_3234 0.68 -1.3
3,476,410 + Dsui_3234 0.81 +0.7
3,476,421 - Dsui_3234 0.82 -0.9
3,476,433 - Dsui_3234 0.84 +0.7
3,476,437 + Dsui_3234 0.85 -1.6
3,476,437 + Dsui_3234 0.85 -2.1
3,476,443 + Dsui_3234 0.85 +0.7
3,476,460 + Dsui_3234 0.88 +0.7
3,476,468 + Dsui_3234 0.89 -0.3
3,476,468 - Dsui_3234 0.89 +2.3
3,476,470 + Dsui_3234 0.89 -1.3
3,476,471 + Dsui_3234 0.89 -0.3
3,476,479 - -1.6
3,476,502 + +0.7
3,476,544 + +0.7
3,476,616 - +2.0
3,476,651 - +0.1
3,476,664 - +1.1
3,476,674 - -0.3
3,476,750 - Dsui_3235 0.13 -1.8
3,476,806 + +0.7
3,476,827 - Dsui_3235 0.21 +2.3
3,476,854 - +1.1
3,476,861 - Dsui_3235 0.25 -0.7
3,476,861 - Dsui_3235 0.25 -0.3
3,476,910 + Dsui_3235 0.30 +0.7
3,476,918 - Dsui_3235 0.31 +1.3
3,476,925 + Dsui_3235 0.32 +0.7
3,476,996 - Dsui_3235 0.39 +0.7
3,477,073 - Dsui_3235 0.47 -1.1
3,477,087 + Dsui_3235 0.49 +0.7
3,477,135 + Dsui_3235 0.54 -0.9
3,477,143 - Dsui_3235 0.55 +0.7
3,477,187 + Dsui_3235 0.59 +0.7
3,477,195 - Dsui_3235 0.60 +1.5
3,477,197 + Dsui_3235 0.61 +0.7
3,477,205 - Dsui_3235 0.61 +1.7
3,477,249 - Dsui_3235 0.66 +1.2
3,477,309 + Dsui_3235 0.72 -1.6
3,477,317 - Dsui_3235 0.73 +0.0
3,477,319 + Dsui_3235 0.73 -0.3
3,477,379 + Dsui_3235 0.80 +0.7
3,477,379 + Dsui_3235 0.80 -1.6
3,477,379 + Dsui_3235 0.80 -0.9
3,477,379 + Dsui_3235 0.80 -0.3
3,477,409 - Dsui_3235 0.83 +1.9
3,477,419 + Dsui_3235 0.84 -2.7
3,477,538 + +0.7
3,477,538 + +0.7
3,477,546 - +3.5
3,477,566 + +0.7
3,477,607 - -0.3
3,477,686 - +0.7
3,477,766 + -1.3
3,477,789 - -0.3
3,477,851 - -1.3
3,477,866 - Dsui_3236 0.10 +0.7
3,477,913 + +0.7
3,477,920 - Dsui_3236 0.14 -0.9
3,477,920 - Dsui_3236 0.14 +0.7
3,477,928 + Dsui_3236 0.15 -0.3
3,477,988 + Dsui_3236 0.19 +0.7
3,478,036 - Dsui_3236 0.22 +0.7
3,478,069 + Dsui_3236 0.25 -0.3
3,478,070 + Dsui_3236 0.25 +0.7
3,478,070 + Dsui_3236 0.25 +0.7
3,478,070 + Dsui_3236 0.25 -0.9
3,478,075 + Dsui_3236 0.25 +0.7
3,478,078 - +0.7
3,478,286 + +0.7
3,478,324 + Dsui_3236 0.43 -0.9
3,478,360 + -0.3
3,478,360 + Dsui_3236 0.45 -0.3
3,478,368 - Dsui_3236 0.46 +0.7
3,478,368 - Dsui_3236 0.46 -0.3
3,478,397 - Dsui_3236 0.48 +0.7
3,478,434 - Dsui_3236 0.50 -0.3
3,478,487 - Dsui_3236 0.54 -0.9

Or see this region's nucleotide sequence