Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3193 and Dsui_3194 overlap by 4 nucleotides Dsui_3194 and Dsui_3195 overlap by 4 nucleotides Dsui_3195 and Dsui_3196 are separated by 130 nucleotides
Dsui_3193: Dsui_3193 - phosphoribosylanthranilate isomerase, at 3,427,581 to 3,428,228
_3193
Dsui_3194: Dsui_3194 - pseudouridylate synthase I, at 3,428,225 to 3,429,052
_3194
Dsui_3195: Dsui_3195 - Cobalt transport protein, at 3,429,049 to 3,429,678
_3195
Dsui_3196: Dsui_3196 - FimV N-terminal domain protein, at 3,429,809 to 3,432,817
_3196
Position (kb)
3429
3430 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3428.262 kb on - strand at 3428.313 kb on - strand, within Dsui_3194 at 3428.394 kb on + strand, within Dsui_3194 at 3428.402 kb on - strand, within Dsui_3194 at 3428.427 kb on - strand, within Dsui_3194 at 3428.454 kb on - strand, within Dsui_3194 at 3428.574 kb on + strand at 3428.582 kb on - strand at 3428.582 kb on - strand, within Dsui_3194 at 3428.621 kb on - strand, within Dsui_3194 at 3428.665 kb on - strand, within Dsui_3194 at 3428.683 kb on - strand, within Dsui_3194 at 3428.992 kb on + strand at 3428.993 kb on + strand at 3429.012 kb on - strand at 3429.027 kb on - strand at 3429.027 kb on - strand at 3429.066 kb on - strand at 3429.290 kb on - strand, within Dsui_3195 at 3429.407 kb on - strand at 3429.431 kb on - strand at 3429.581 kb on + strand at 3429.826 kb on + strand at 3429.897 kb on - strand at 3430.022 kb on - strand at 3430.068 kb on + strand at 3430.377 kb on - strand, within Dsui_3196 at 3430.416 kb on + strand at 3430.417 kb on + strand, within Dsui_3196 at 3430.482 kb on + strand, within Dsui_3196 at 3430.556 kb on - strand, within Dsui_3196 at 3430.556 kb on - strand, within Dsui_3196 at 3430.604 kb on + strand, within Dsui_3196 at 3430.622 kb on + strand, within Dsui_3196 at 3430.625 kb on - strand, within Dsui_3196 at 3430.653 kb on + strand, within Dsui_3196 at 3430.661 kb on + strand, within Dsui_3196 at 3430.673 kb on - strand, within Dsui_3196
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,428,262 - +0.0 3,428,313 - Dsui_3194 0.11 -0.9 3,428,394 + Dsui_3194 0.20 -1.9 3,428,402 - Dsui_3194 0.21 +1.8 3,428,427 - Dsui_3194 0.24 +3.5 3,428,454 - Dsui_3194 0.28 +2.5 3,428,574 + -1.6 3,428,582 - +1.5 3,428,582 - Dsui_3194 0.43 +2.7 3,428,621 - Dsui_3194 0.48 +2.9 3,428,665 - Dsui_3194 0.53 +4.0 3,428,683 - Dsui_3194 0.55 +1.2 3,428,992 + +0.7 3,428,993 + -0.9 3,429,012 - +2.1 3,429,027 - +2.0 3,429,027 - +2.8 3,429,066 - +1.9 3,429,290 - Dsui_3195 0.38 +0.7 3,429,407 - +2.2 3,429,431 - +0.7 3,429,581 + -0.3 3,429,826 + +0.7 3,429,897 - +0.9 3,430,022 - +0.5 3,430,068 + -1.3 3,430,377 - Dsui_3196 0.19 +0.8 3,430,416 + -0.9 3,430,417 + Dsui_3196 0.20 -1.6 3,430,482 + Dsui_3196 0.22 +0.7 3,430,556 - Dsui_3196 0.25 +0.8 3,430,556 - Dsui_3196 0.25 +0.6 3,430,604 + Dsui_3196 0.26 -1.3 3,430,622 + Dsui_3196 0.27 +0.7 3,430,625 - Dsui_3196 0.27 +0.9 3,430,653 + Dsui_3196 0.28 +0.7 3,430,661 + Dsui_3196 0.28 -1.3 3,430,673 - Dsui_3196 0.29 +0.5
Or see this region's nucleotide sequence