Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3173 and Dsui_3174 are separated by 104 nucleotides Dsui_3174 and Dsui_3175 are separated by 463 nucleotides
Dsui_3173: Dsui_3173 - transcriptional regulator, at 3,402,450 to 3,403,376
_3173
Dsui_3174: Dsui_3174 - DNA/RNA helicase, superfamily II, at 3,403,481 to 3,404,902
_3174
Dsui_3175: Dsui_3175 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,405,366 to 3,406,901
_3175
Position (kb)
3403
3404
3405 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3402.502 kb on + strand at 3402.502 kb on + strand at 3402.558 kb on - strand, within Dsui_3173 at 3402.575 kb on - strand, within Dsui_3173 at 3402.585 kb on - strand, within Dsui_3173 at 3402.621 kb on - strand at 3402.621 kb on - strand, within Dsui_3173 at 3402.621 kb on - strand at 3402.709 kb on + strand, within Dsui_3173 at 3402.709 kb on + strand, within Dsui_3173 at 3402.709 kb on + strand, within Dsui_3173 at 3402.833 kb on + strand, within Dsui_3173 at 3402.980 kb on + strand, within Dsui_3173 at 3403.006 kb on - strand at 3403.168 kb on + strand, within Dsui_3173 at 3403.176 kb on - strand at 3403.176 kb on - strand at 3403.183 kb on - strand at 3403.718 kb on + strand at 3403.726 kb on - strand, within Dsui_3174 at 3403.796 kb on - strand, within Dsui_3174 at 3403.961 kb on + strand, within Dsui_3174 at 3404.048 kb on - strand, within Dsui_3174 at 3404.452 kb on + strand, within Dsui_3174 at 3404.452 kb on + strand, within Dsui_3174 at 3404.452 kb on + strand at 3404.460 kb on - strand, within Dsui_3174 at 3404.475 kb on - strand, within Dsui_3174 at 3404.595 kb on - strand, within Dsui_3174 at 3404.734 kb on + strand at 3404.742 kb on - strand, within Dsui_3174 at 3404.838 kb on + strand at 3404.838 kb on + strand at 3404.838 kb on + strand at 3404.846 kb on - strand at 3404.846 kb on - strand at 3404.846 kb on - strand at 3404.846 kb on - strand at 3404.846 kb on - strand at 3404.851 kb on - strand at 3404.907 kb on - strand at 3404.922 kb on + strand at 3404.930 kb on - strand at 3404.930 kb on - strand at 3405.081 kb on - strand at 3405.220 kb on + strand at 3405.466 kb on - strand at 3405.466 kb on - strand at 3405.505 kb on + strand at 3405.658 kb on + strand, within Dsui_3175 at 3405.680 kb on + strand at 3405.778 kb on + strand, within Dsui_3175
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,402,502 + +0.2 3,402,502 + -0.2 3,402,558 - Dsui_3173 0.12 -2.1 3,402,575 - Dsui_3173 0.13 -0.0 3,402,585 - Dsui_3173 0.15 +0.7 3,402,621 - +0.7 3,402,621 - Dsui_3173 0.18 +0.7 3,402,621 - +0.7 3,402,709 + Dsui_3173 0.28 +0.5 3,402,709 + Dsui_3173 0.28 -0.1 3,402,709 + Dsui_3173 0.28 -0.0 3,402,833 + Dsui_3173 0.41 -0.3 3,402,980 + Dsui_3173 0.57 +0.3 3,403,006 - +0.7 3,403,168 + Dsui_3173 0.77 -0.2 3,403,176 - +0.7 3,403,176 - +0.7 3,403,183 - -0.3 3,403,718 + +0.7 3,403,726 - Dsui_3174 0.17 +0.4 3,403,796 - Dsui_3174 0.22 -0.4 3,403,961 + Dsui_3174 0.34 -0.9 3,404,048 - Dsui_3174 0.40 -0.9 3,404,452 + Dsui_3174 0.68 -0.9 3,404,452 + Dsui_3174 0.68 -0.3 3,404,452 + +0.7 3,404,460 - Dsui_3174 0.69 -0.9 3,404,475 - Dsui_3174 0.70 -0.6 3,404,595 - Dsui_3174 0.78 -0.8 3,404,734 + -0.3 3,404,742 - Dsui_3174 0.89 -1.1 3,404,838 + -1.3 3,404,838 + +0.7 3,404,838 + -0.9 3,404,846 - -1.4 3,404,846 - -1.4 3,404,846 - -0.0 3,404,846 - -1.1 3,404,846 - -0.6 3,404,851 - -1.7 3,404,907 - -1.4 3,404,922 + -0.3 3,404,930 - -2.8 3,404,930 - -0.5 3,405,081 - -0.9 3,405,220 + -0.9 3,405,466 - +0.7 3,405,466 - -1.6 3,405,505 + -0.3 3,405,658 + Dsui_3175 0.19 -0.9 3,405,680 + -0.3 3,405,778 + Dsui_3175 0.27 -0.9
Or see this region's nucleotide sequence