Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3157 and Dsui_3158 are separated by 78 nucleotides Dsui_3158 and Dsui_3159 are separated by 180 nucleotides
Dsui_3157: Dsui_3157 - Fatty acid cis/trans isomerase (CTI), at 3,379,501 to 3,381,852
_3157
Dsui_3158: Dsui_3158 - Na+/H+ dicarboxylate symporter, at 3,381,931 to 3,383,277
_3158
Dsui_3159: Dsui_3159 - PAS domain S-box, at 3,383,458 to 3,385,446
_3159
Position (kb)
3381
3382
3383
3384 Strain fitness (log2 ratio)
-2
-1
0
1 at 3381.034 kb on + strand, within Dsui_3157 at 3381.168 kb on + strand, within Dsui_3157 at 3381.432 kb on + strand, within Dsui_3157 at 3381.453 kb on - strand at 3381.480 kb on + strand, within Dsui_3157 at 3381.583 kb on + strand, within Dsui_3157 at 3381.601 kb on - strand, within Dsui_3157 at 3381.678 kb on + strand at 3381.728 kb on + strand at 3381.728 kb on + strand at 3381.728 kb on + strand at 3381.728 kb on + strand at 3381.736 kb on - strand at 3381.736 kb on - strand at 3381.802 kb on + strand at 3381.834 kb on - strand at 3381.834 kb on - strand at 3381.926 kb on - strand at 3381.992 kb on + strand at 3381.993 kb on - strand at 3382.162 kb on + strand, within Dsui_3158 at 3382.282 kb on - strand, within Dsui_3158 at 3382.308 kb on - strand, within Dsui_3158 at 3382.358 kb on - strand, within Dsui_3158 at 3382.379 kb on - strand, within Dsui_3158 at 3382.505 kb on - strand, within Dsui_3158 at 3382.588 kb on + strand, within Dsui_3158 at 3382.663 kb on - strand, within Dsui_3158 at 3382.701 kb on - strand, within Dsui_3158 at 3382.776 kb on + strand, within Dsui_3158 at 3382.818 kb on - strand, within Dsui_3158 at 3382.870 kb on - strand, within Dsui_3158 at 3382.900 kb on - strand, within Dsui_3158 at 3383.059 kb on - strand, within Dsui_3158 at 3383.100 kb on + strand, within Dsui_3158 at 3383.143 kb on - strand at 3383.168 kb on + strand at 3383.223 kb on - strand at 3383.410 kb on - strand at 3383.446 kb on + strand at 3383.489 kb on + strand at 3383.576 kb on - strand at 3383.669 kb on + strand, within Dsui_3159 at 3383.701 kb on - strand, within Dsui_3159 at 3383.764 kb on + strand, within Dsui_3159 at 3383.829 kb on - strand at 3383.857 kb on + strand, within Dsui_3159 at 3384.062 kb on - strand, within Dsui_3159 at 3384.154 kb on - strand, within Dsui_3159 at 3384.251 kb on - strand, within Dsui_3159
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,381,034 + Dsui_3157 0.65 +0.7 3,381,168 + Dsui_3157 0.71 -2.6 3,381,432 + Dsui_3157 0.82 +0.7 3,381,453 - +0.7 3,381,480 + Dsui_3157 0.84 +0.7 3,381,583 + Dsui_3157 0.89 +0.7 3,381,601 - Dsui_3157 0.89 -1.3 3,381,678 + +0.7 3,381,728 + -1.6 3,381,728 + -0.9 3,381,728 + -0.9 3,381,728 + -1.6 3,381,736 - -0.3 3,381,736 - +0.7 3,381,802 + -0.3 3,381,834 - -0.3 3,381,834 - +0.7 3,381,926 - -0.8 3,381,992 + -1.3 3,381,993 - -0.6 3,382,162 + Dsui_3158 0.17 -1.6 3,382,282 - Dsui_3158 0.26 -2.0 3,382,308 - Dsui_3158 0.28 +0.7 3,382,358 - Dsui_3158 0.32 -0.0 3,382,379 - Dsui_3158 0.33 -0.7 3,382,505 - Dsui_3158 0.43 -1.6 3,382,588 + Dsui_3158 0.49 +0.7 3,382,663 - Dsui_3158 0.54 -1.2 3,382,701 - Dsui_3158 0.57 +0.7 3,382,776 + Dsui_3158 0.63 -0.3 3,382,818 - Dsui_3158 0.66 -1.6 3,382,870 - Dsui_3158 0.70 -0.3 3,382,900 - Dsui_3158 0.72 +0.4 3,383,059 - Dsui_3158 0.84 -0.6 3,383,100 + Dsui_3158 0.87 +0.7 3,383,143 - -1.7 3,383,168 + -0.9 3,383,223 - -1.1 3,383,410 - -1.3 3,383,446 + -1.6 3,383,489 + +0.7 3,383,576 - -0.3 3,383,669 + Dsui_3159 0.11 +1.1 3,383,701 - Dsui_3159 0.12 -1.3 3,383,764 + Dsui_3159 0.15 +1.2 3,383,829 - +0.7 3,383,857 + Dsui_3159 0.20 +0.1 3,384,062 - Dsui_3159 0.30 -0.3 3,384,154 - Dsui_3159 0.35 +0.7 3,384,251 - Dsui_3159 0.40 -0.9
Or see this region's nucleotide sequence