Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3120 and Dsui_3121 are separated by 12 nucleotides Dsui_3121 and Dsui_3122 are separated by 227 nucleotides Dsui_3122 and Dsui_3123 overlap by 26 nucleotides
Dsui_3120: Dsui_3120 - cAMP-binding protein, at 3,342,362 to 3,343,102
_3120
Dsui_3121: Dsui_3121 - hypothetical protein, at 3,343,115 to 3,343,849
_3121
Dsui_3122: Dsui_3122 - PAS domain S-box, at 3,344,077 to 3,344,598
_3122
Dsui_3123: Dsui_3123 - methyl-accepting chemotaxis protein, at 3,344,573 to 3,345,868
_3123
Position (kb)
3344
3345 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3343.088 kb on - strand at 3343.090 kb on + strand at 3343.104 kb on - strand at 3343.174 kb on - strand at 3343.314 kb on + strand, within Dsui_3121 at 3343.320 kb on - strand, within Dsui_3121 at 3343.597 kb on + strand, within Dsui_3121 at 3343.814 kb on + strand at 3343.942 kb on - strand at 3344.024 kb on - strand at 3344.090 kb on - strand at 3344.115 kb on + strand at 3344.294 kb on + strand, within Dsui_3122 at 3344.294 kb on + strand, within Dsui_3122 at 3344.427 kb on + strand, within Dsui_3122 at 3344.432 kb on + strand, within Dsui_3122 at 3344.446 kb on - strand at 3344.537 kb on - strand, within Dsui_3122 at 3344.561 kb on - strand at 3344.566 kb on - strand at 3344.578 kb on - strand at 3344.733 kb on + strand, within Dsui_3123 at 3344.765 kb on + strand, within Dsui_3123 at 3344.773 kb on - strand, within Dsui_3123 at 3344.945 kb on - strand, within Dsui_3123 at 3345.256 kb on - strand, within Dsui_3123 at 3345.377 kb on + strand, within Dsui_3123 at 3345.428 kb on + strand, within Dsui_3123 at 3345.459 kb on - strand, within Dsui_3123 at 3345.596 kb on - strand, within Dsui_3123
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,343,088 - -0.9 3,343,090 + +1.7 3,343,104 - -2.6 3,343,174 - -0.9 3,343,314 + Dsui_3121 0.27 +0.7 3,343,320 - Dsui_3121 0.28 -0.9 3,343,597 + Dsui_3121 0.66 -0.9 3,343,814 + +0.7 3,343,942 - +0.7 3,344,024 - -0.9 3,344,090 - +0.7 3,344,115 + +0.1 3,344,294 + Dsui_3122 0.42 +0.7 3,344,294 + Dsui_3122 0.42 +0.2 3,344,427 + Dsui_3122 0.67 +0.1 3,344,432 + Dsui_3122 0.68 -0.1 3,344,446 - +0.7 3,344,537 - Dsui_3122 0.88 -2.7 3,344,561 - -1.3 3,344,566 - -2.5 3,344,578 - -1.3 3,344,733 + Dsui_3123 0.12 -0.1 3,344,765 + Dsui_3123 0.15 -1.0 3,344,773 - Dsui_3123 0.15 -0.9 3,344,945 - Dsui_3123 0.29 -0.3 3,345,256 - Dsui_3123 0.53 -2.3 3,345,377 + Dsui_3123 0.62 +0.0 3,345,428 + Dsui_3123 0.66 -0.6 3,345,459 - Dsui_3123 0.68 -3.1 3,345,596 - Dsui_3123 0.79 -0.3
Or see this region's nucleotide sequence