Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3105 and Dsui_3106 are separated by 291 nucleotides Dsui_3106 and Dsui_3107 overlap by 8 nucleotides Dsui_3107 and Dsui_3108 are separated by 38 nucleotides
Dsui_3105: Dsui_3105 - CBS domain-containing protein, at 3,324,730 to 3,326,046
_3105
Dsui_3106: Dsui_3106 - hypothetical protein, at 3,326,338 to 3,326,718
_3106
Dsui_3107: Dsui_3107 - Zn-dependent hydrolase, glyoxylase, at 3,326,711 to 3,327,349
_3107
Dsui_3108: Dsui_3108 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,327,388 to 3,330,702
_3108
Position (kb)
3326
3327
3328 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3325.736 kb on + strand, within Dsui_3105 at 3325.744 kb on - strand, within Dsui_3105 at 3325.791 kb on + strand, within Dsui_3105 at 3325.798 kb on + strand, within Dsui_3105 at 3325.799 kb on - strand, within Dsui_3105 at 3326.076 kb on + strand at 3326.084 kb on - strand at 3326.084 kb on - strand at 3326.168 kb on - strand at 3326.227 kb on - strand at 3326.270 kb on - strand at 3326.344 kb on - strand at 3326.513 kb on - strand, within Dsui_3106 at 3326.572 kb on + strand, within Dsui_3106 at 3326.581 kb on + strand at 3326.647 kb on - strand, within Dsui_3106 at 3326.903 kb on - strand, within Dsui_3107 at 3326.908 kb on + strand at 3326.912 kb on - strand, within Dsui_3107 at 3326.974 kb on - strand, within Dsui_3107 at 3327.039 kb on - strand, within Dsui_3107 at 3327.073 kb on + strand at 3327.090 kb on + strand at 3327.189 kb on + strand at 3327.199 kb on + strand at 3327.205 kb on + strand at 3327.213 kb on - strand, within Dsui_3107 at 3327.213 kb on - strand, within Dsui_3107 at 3327.291 kb on + strand at 3327.359 kb on - strand at 3327.518 kb on - strand at 3327.579 kb on + strand at 3327.734 kb on - strand, within Dsui_3108 at 3327.763 kb on + strand at 3327.829 kb on - strand, within Dsui_3108 at 3327.830 kb on - strand, within Dsui_3108 at 3327.830 kb on - strand, within Dsui_3108 at 3327.832 kb on + strand, within Dsui_3108 at 3327.899 kb on + strand at 3327.904 kb on + strand, within Dsui_3108 at 3327.904 kb on + strand at 3328.127 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,325,736 + Dsui_3105 0.76 +0.7 3,325,744 - Dsui_3105 0.77 -2.5 3,325,791 + Dsui_3105 0.81 -0.3 3,325,798 + Dsui_3105 0.81 -1.6 3,325,799 - Dsui_3105 0.81 -4.2 3,326,076 + +0.7 3,326,084 - -2.6 3,326,084 - -1.8 3,326,168 - -2.1 3,326,227 - +0.7 3,326,270 - +0.9 3,326,344 - +0.6 3,326,513 - Dsui_3106 0.46 -0.2 3,326,572 + Dsui_3106 0.61 -1.6 3,326,581 + +0.7 3,326,647 - Dsui_3106 0.81 -0.7 3,326,903 - Dsui_3107 0.30 -0.2 3,326,908 + +0.7 3,326,912 - Dsui_3107 0.31 -0.2 3,326,974 - Dsui_3107 0.41 +0.4 3,327,039 - Dsui_3107 0.51 -0.1 3,327,073 + +0.7 3,327,090 + +0.7 3,327,189 + +0.7 3,327,199 + -0.3 3,327,205 + -0.3 3,327,213 - Dsui_3107 0.79 +0.5 3,327,213 - Dsui_3107 0.79 +1.2 3,327,291 + -0.3 3,327,359 - +0.7 3,327,518 - -0.9 3,327,579 + -0.3 3,327,734 - Dsui_3108 0.10 -0.1 3,327,763 + -0.3 3,327,829 - Dsui_3108 0.13 +0.1 3,327,830 - Dsui_3108 0.13 -0.4 3,327,830 - Dsui_3108 0.13 +0.1 3,327,832 + Dsui_3108 0.13 -0.9 3,327,899 + -0.3 3,327,904 + Dsui_3108 0.16 -0.9 3,327,904 + -0.3 3,328,127 + -1.6
Or see this region's nucleotide sequence