Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3096 and Dsui_3097 are separated by 196 nucleotides Dsui_3097 and Dsui_3098 overlap by 4 nucleotides Dsui_3098 and Dsui_3099 overlap by 4 nucleotides
Dsui_3096: Dsui_3096 - NADH dehydrogenase, FAD-containing subunit, at 3,313,813 to 3,315,132
_3096
Dsui_3097: Dsui_3097 - O-6-methylguanine DNA methyltransferase, at 3,315,329 to 3,316,552
_3097
Dsui_3098: Dsui_3098 - alkylated DNA repair protein, at 3,316,549 to 3,317,211
_3098
Dsui_3099: Dsui_3099 - 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase, at 3,317,208 to 3,318,188
_3099
Position (kb)
3315
3316
3317 Strain fitness (log2 ratio)
-2
-1
0
1 at 3314.357 kb on + strand at 3314.415 kb on - strand at 3314.428 kb on - strand at 3314.502 kb on - strand at 3314.519 kb on - strand, within Dsui_3096 at 3314.520 kb on - strand, within Dsui_3096 at 3314.533 kb on + strand at 3314.652 kb on - strand, within Dsui_3096 at 3314.658 kb on - strand, within Dsui_3096 at 3314.720 kb on + strand at 3314.768 kb on + strand, within Dsui_3096 at 3314.862 kb on - strand, within Dsui_3096 at 3315.506 kb on + strand, within Dsui_3097 at 3315.531 kb on + strand at 3316.342 kb on + strand, within Dsui_3097 at 3316.342 kb on + strand, within Dsui_3097 at 3316.350 kb on - strand, within Dsui_3097 at 3316.350 kb on - strand, within Dsui_3097 at 3316.350 kb on - strand at 3316.350 kb on - strand at 3316.529 kb on + strand at 3316.534 kb on + strand at 3316.534 kb on + strand at 3316.542 kb on - strand at 3316.554 kb on - strand at 3316.601 kb on - strand at 3316.726 kb on + strand at 3316.847 kb on - strand, within Dsui_3098 at 3317.183 kb on + strand at 3317.362 kb on + strand at 3317.417 kb on + strand at 3317.425 kb on - strand at 3317.429 kb on + strand, within Dsui_3099 at 3317.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,314,357 + +0.7 3,314,415 - +0.7 3,314,428 - +0.7 3,314,502 - +0.7 3,314,519 - Dsui_3096 0.53 -0.9 3,314,520 - Dsui_3096 0.54 -0.3 3,314,533 + -0.3 3,314,652 - Dsui_3096 0.64 -1.9 3,314,658 - Dsui_3096 0.64 -0.3 3,314,720 + +0.7 3,314,768 + Dsui_3096 0.72 -0.9 3,314,862 - Dsui_3096 0.79 +0.7 3,315,506 + Dsui_3097 0.14 -2.1 3,315,531 + -0.9 3,316,342 + Dsui_3097 0.83 -0.3 3,316,342 + Dsui_3097 0.83 -0.3 3,316,350 - Dsui_3097 0.83 -2.4 3,316,350 - Dsui_3097 0.83 -0.9 3,316,350 - -1.9 3,316,350 - +0.7 3,316,529 + -1.6 3,316,534 + -0.3 3,316,534 + -1.3 3,316,542 - +0.7 3,316,554 - -0.9 3,316,601 - -1.3 3,316,726 + +0.7 3,316,847 - Dsui_3098 0.45 -1.3 3,317,183 + -0.9 3,317,362 + +0.7 3,317,417 + +0.7 3,317,425 - -0.9 3,317,429 + Dsui_3099 0.23 -1.6 3,317,443 + -0.3
Or see this region's nucleotide sequence