Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3089 and Dsui_3090 are separated by 286 nucleotides Dsui_3090 and Dsui_3091 are separated by 9 nucleotides Dsui_3091 and Dsui_3092 are separated by 122 nucleotides
Dsui_3089: Dsui_3089 - UDP-2,3-diacylglucosamine hydrolase, at 3,307,447 to 3,308,205
_3089
Dsui_3090: Dsui_3090 - hypothetical protein, at 3,308,492 to 3,308,770
_3090
Dsui_3091: Dsui_3091 - integral membrane protein, TerC family, at 3,308,780 to 3,309,745
_3091
Dsui_3092: Dsui_3092 - ATP-dependent DNA helicase RecQ, at 3,309,868 to 3,311,706
_3092
Position (kb)
3308
3309
3310 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3308.233 kb on + strand at 3308.247 kb on + strand at 3308.249 kb on - strand at 3308.297 kb on + strand at 3308.459 kb on + strand at 3308.467 kb on - strand at 3308.587 kb on + strand, within Dsui_3090 at 3308.620 kb on + strand, within Dsui_3090 at 3308.628 kb on - strand at 3308.662 kb on - strand at 3308.854 kb on - strand at 3308.857 kb on - strand at 3308.866 kb on + strand at 3308.903 kb on + strand, within Dsui_3091 at 3308.903 kb on + strand, within Dsui_3091 at 3308.911 kb on - strand at 3308.925 kb on + strand, within Dsui_3091 at 3308.931 kb on + strand, within Dsui_3091 at 3309.061 kb on + strand, within Dsui_3091 at 3309.115 kb on + strand, within Dsui_3091 at 3309.147 kb on + strand, within Dsui_3091 at 3309.212 kb on - strand at 3309.235 kb on + strand, within Dsui_3091 at 3309.489 kb on - strand at 3309.538 kb on - strand, within Dsui_3091 at 3309.592 kb on - strand, within Dsui_3091 at 3309.612 kb on + strand, within Dsui_3091 at 3309.823 kb on + strand at 3310.041 kb on + strand at 3310.130 kb on - strand, within Dsui_3092 at 3310.162 kb on + strand, within Dsui_3092 at 3310.504 kb on + strand, within Dsui_3092 at 3310.535 kb on - strand, within Dsui_3092 at 3310.542 kb on - strand, within Dsui_3092 at 3310.574 kb on - strand, within Dsui_3092 at 3310.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,308,233 + +0.7 3,308,247 + -1.9 3,308,249 - -0.9 3,308,297 + +0.2 3,308,459 + -0.4 3,308,467 - -1.3 3,308,587 + Dsui_3090 0.34 +0.3 3,308,620 + Dsui_3090 0.46 +0.4 3,308,628 - -0.3 3,308,662 - -0.3 3,308,854 - -0.9 3,308,857 - -1.9 3,308,866 + +2.7 3,308,903 + Dsui_3091 0.13 +1.7 3,308,903 + Dsui_3091 0.13 +0.7 3,308,911 - +0.7 3,308,925 + Dsui_3091 0.15 +0.7 3,308,931 + Dsui_3091 0.16 +1.1 3,309,061 + Dsui_3091 0.29 +2.1 3,309,115 + Dsui_3091 0.35 +0.5 3,309,147 + Dsui_3091 0.38 +2.7 3,309,212 - -0.3 3,309,235 + Dsui_3091 0.47 +1.0 3,309,489 - +0.7 3,309,538 - Dsui_3091 0.78 +1.4 3,309,592 - Dsui_3091 0.84 +0.7 3,309,612 + Dsui_3091 0.86 +2.7 3,309,823 + +0.7 3,310,041 + -0.1 3,310,130 - Dsui_3092 0.14 +0.7 3,310,162 + Dsui_3092 0.16 -0.7 3,310,504 + Dsui_3092 0.35 -0.7 3,310,535 - Dsui_3092 0.36 -0.9 3,310,542 - Dsui_3092 0.37 -0.3 3,310,574 - Dsui_3092 0.38 -0.3 3,310,702 - -0.9
Or see this region's nucleotide sequence