Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3082 and Dsui_3083 are separated by 140 nucleotides Dsui_3083 and Dsui_3084 are separated by 98 nucleotides
Dsui_3082: Dsui_3082 - chaperone protein DnaJ, at 3,299,528 to 3,300,667
_3082
Dsui_3083: Dsui_3083 - ABC-type branched-chain amino acid transport system, periplasmic component, at 3,300,808 to 3,301,953
_3083
Dsui_3084: Dsui_3084 - cysteinyl-tRNA synthetase, at 3,302,052 to 3,303,482
_3084
Position (kb)
3300
3301
3302 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3300.492 kb on + strand, within Dsui_3082 at 3300.580 kb on + strand at 3300.633 kb on + strand at 3300.757 kb on - strand at 3300.780 kb on + strand at 3300.859 kb on + strand at 3300.936 kb on - strand, within Dsui_3083 at 3300.994 kb on - strand at 3301.128 kb on - strand, within Dsui_3083 at 3301.188 kb on - strand, within Dsui_3083 at 3301.328 kb on + strand, within Dsui_3083 at 3301.328 kb on + strand, within Dsui_3083 at 3301.444 kb on - strand, within Dsui_3083 at 3301.451 kb on + strand, within Dsui_3083 at 3301.454 kb on - strand, within Dsui_3083 at 3301.481 kb on - strand, within Dsui_3083 at 3301.493 kb on - strand, within Dsui_3083 at 3301.502 kb on + strand, within Dsui_3083 at 3301.557 kb on + strand, within Dsui_3083 at 3301.606 kb on + strand, within Dsui_3083 at 3301.644 kb on + strand, within Dsui_3083 at 3301.645 kb on + strand, within Dsui_3083 at 3301.675 kb on - strand, within Dsui_3083 at 3301.740 kb on - strand, within Dsui_3083 at 3301.749 kb on + strand, within Dsui_3083 at 3301.830 kb on + strand, within Dsui_3083 at 3301.855 kb on - strand at 3301.855 kb on - strand at 3301.878 kb on + strand at 3301.942 kb on + strand at 3301.947 kb on + strand at 3302.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,300,492 + Dsui_3082 0.85 +1.3 3,300,580 + -0.3 3,300,633 + -0.1 3,300,757 - -0.9 3,300,780 + -0.1 3,300,859 + +2.3 3,300,936 - Dsui_3083 0.11 -0.3 3,300,994 - +0.7 3,301,128 - Dsui_3083 0.28 +0.7 3,301,188 - Dsui_3083 0.33 -0.3 3,301,328 + Dsui_3083 0.45 +1.5 3,301,328 + Dsui_3083 0.45 +1.3 3,301,444 - Dsui_3083 0.55 +0.7 3,301,451 + Dsui_3083 0.56 +1.5 3,301,454 - Dsui_3083 0.56 +3.5 3,301,481 - Dsui_3083 0.59 -1.3 3,301,493 - Dsui_3083 0.60 +0.7 3,301,502 + Dsui_3083 0.61 +1.2 3,301,557 + Dsui_3083 0.65 +1.6 3,301,606 + Dsui_3083 0.70 +1.8 3,301,644 + Dsui_3083 0.73 +0.9 3,301,645 + Dsui_3083 0.73 +1.3 3,301,675 - Dsui_3083 0.76 -2.5 3,301,740 - Dsui_3083 0.81 -1.3 3,301,749 + Dsui_3083 0.82 +0.9 3,301,830 + Dsui_3083 0.89 +1.3 3,301,855 - -0.3 3,301,855 - -1.3 3,301,878 + +1.4 3,301,942 + +1.3 3,301,947 + +0.6 3,302,052 - +0.8
Or see this region's nucleotide sequence