Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2975 and Dsui_2976 are separated by 164 nucleotides Dsui_2976 and Dsui_2977 overlap by 4 nucleotides Dsui_2977 and Dsui_2978 are separated by 290 nucleotides
Dsui_2975: Dsui_2975 - TonB-dependent siderophore receptor, at 3,180,448 to 3,182,874
_2975
Dsui_2976: Dsui_2976 - Fe2+-dicitrate sensor, membrane component, at 3,183,039 to 3,184,058
_2976
Dsui_2977: Dsui_2977 - RNA polymerase sigma factor, sigma-70 family, at 3,184,055 to 3,184,567
_2977
Dsui_2978: Dsui_2978 - dihydroorotate dehydrogenase, subfamily 2, at 3,184,858 to 3,185,919
_2978
Position (kb)
3183
3184
3185 Strain fitness (log2 ratio)
-1
0
1 at 3182.195 kb on - strand at 3182.225 kb on + strand at 3182.247 kb on + strand, within Dsui_2975 at 3182.254 kb on + strand at 3182.255 kb on - strand at 3182.341 kb on - strand, within Dsui_2975 at 3182.379 kb on - strand, within Dsui_2975 at 3182.542 kb on - strand, within Dsui_2975 at 3182.689 kb on - strand at 3182.902 kb on - strand at 3182.919 kb on - strand at 3182.929 kb on - strand at 3182.931 kb on + strand at 3182.939 kb on - strand at 3183.114 kb on - strand at 3183.184 kb on - strand, within Dsui_2976 at 3183.358 kb on + strand at 3183.364 kb on + strand at 3183.419 kb on - strand, within Dsui_2976 at 3183.503 kb on - strand, within Dsui_2976 at 3183.560 kb on - strand, within Dsui_2976 at 3183.584 kb on - strand, within Dsui_2976 at 3183.733 kb on + strand at 3184.106 kb on - strand at 3184.106 kb on - strand at 3184.164 kb on + strand, within Dsui_2977 at 3184.319 kb on - strand, within Dsui_2977 at 3184.360 kb on - strand, within Dsui_2977 at 3184.400 kb on - strand, within Dsui_2977 at 3184.445 kb on + strand, within Dsui_2977 at 3184.484 kb on - strand, within Dsui_2977 at 3184.521 kb on - strand at 3184.537 kb on - strand at 3184.747 kb on - strand at 3184.851 kb on - strand at 3184.882 kb on + strand at 3184.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,182,195 - +0.8 3,182,225 + -0.2 3,182,247 + Dsui_2975 0.74 -1.2 3,182,254 + +0.8 3,182,255 - -0.2 3,182,341 - Dsui_2975 0.78 -1.2 3,182,379 - Dsui_2975 0.80 -0.2 3,182,542 - Dsui_2975 0.86 -0.2 3,182,689 - +0.8 3,182,902 - +0.8 3,182,919 - -0.1 3,182,929 - -0.2 3,182,931 + -0.2 3,182,939 - -0.8 3,183,114 - -0.2 3,183,184 - Dsui_2976 0.14 +0.1 3,183,358 + +0.8 3,183,364 + -0.2 3,183,419 - Dsui_2976 0.37 -0.0 3,183,503 - Dsui_2976 0.45 -0.2 3,183,560 - Dsui_2976 0.51 +0.1 3,183,584 - Dsui_2976 0.53 -0.6 3,183,733 + +0.8 3,184,106 - -0.1 3,184,106 - -0.1 3,184,164 + Dsui_2977 0.21 -0.8 3,184,319 - Dsui_2977 0.51 -0.2 3,184,360 - Dsui_2977 0.59 +0.3 3,184,400 - Dsui_2977 0.67 +0.4 3,184,445 + Dsui_2977 0.76 -1.2 3,184,484 - Dsui_2977 0.84 +0.2 3,184,521 - +0.8 3,184,537 - +1.5 3,184,747 - -0.8 3,184,851 - +0.8 3,184,882 + +0.2 3,184,882 + +0.8
Or see this region's nucleotide sequence