Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2943 and Dsui_2944 are separated by 149 nucleotides Dsui_2944 and Dsui_2945 are separated by 313 nucleotides Dsui_2945 and Dsui_2946 overlap by 1 nucleotides
Dsui_2943: Dsui_2943 - ABC-type spermidine/putrescine transport system, ATPase component, at 3,148,752 to 3,149,822
_2943
Dsui_2944: Dsui_2944 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,149,972 to 3,151,684
_2944
Dsui_2945: Dsui_2945 - hypothetical protein, at 3,151,998 to 3,152,486
_2945
Dsui_2946: Dsui_2946 - DNA/RNA helicase, superfamily II, at 3,152,486 to 3,153,916
_2946
Position (kb)
3149
3150
3151
3152 Strain fitness (log2 ratio)
-1
0
1 at 3149.019 kb on - strand, within Dsui_2943 at 3149.060 kb on - strand at 3149.247 kb on + strand, within Dsui_2943 at 3149.326 kb on + strand, within Dsui_2943 at 3149.336 kb on + strand, within Dsui_2943 at 3149.406 kb on + strand, within Dsui_2943 at 3149.462 kb on + strand, within Dsui_2943 at 3149.479 kb on + strand, within Dsui_2943 at 3149.597 kb on + strand, within Dsui_2943 at 3149.635 kb on - strand, within Dsui_2943 at 3149.654 kb on + strand, within Dsui_2943 at 3149.681 kb on + strand, within Dsui_2943 at 3149.689 kb on - strand at 3149.689 kb on - strand at 3149.689 kb on - strand at 3149.730 kb on - strand at 3149.743 kb on + strand at 3149.781 kb on - strand at 3149.968 kb on + strand at 3149.968 kb on + strand at 3150.066 kb on - strand at 3150.124 kb on + strand at 3150.126 kb on - strand at 3150.140 kb on + strand at 3150.239 kb on + strand, within Dsui_2944 at 3150.239 kb on + strand, within Dsui_2944 at 3150.247 kb on - strand at 3150.277 kb on + strand, within Dsui_2944 at 3150.385 kb on + strand, within Dsui_2944 at 3150.397 kb on - strand, within Dsui_2944 at 3150.438 kb on - strand, within Dsui_2944 at 3150.475 kb on + strand, within Dsui_2944 at 3150.483 kb on - strand, within Dsui_2944 at 3150.541 kb on + strand, within Dsui_2944 at 3150.597 kb on - strand, within Dsui_2944 at 3150.705 kb on - strand, within Dsui_2944 at 3150.721 kb on + strand, within Dsui_2944 at 3150.721 kb on + strand, within Dsui_2944 at 3150.729 kb on - strand, within Dsui_2944 at 3150.798 kb on + strand, within Dsui_2944 at 3150.840 kb on + strand, within Dsui_2944 at 3150.848 kb on - strand, within Dsui_2944 at 3150.848 kb on - strand, within Dsui_2944 at 3151.159 kb on + strand, within Dsui_2944 at 3151.159 kb on + strand, within Dsui_2944 at 3151.160 kb on + strand, within Dsui_2944 at 3151.160 kb on + strand, within Dsui_2944 at 3151.369 kb on - strand, within Dsui_2944 at 3151.557 kb on + strand at 3151.617 kb on - strand at 3151.629 kb on - strand at 3151.786 kb on - strand at 3151.811 kb on + strand at 3151.870 kb on - strand at 3151.907 kb on - strand at 3151.950 kb on - strand at 3151.955 kb on + strand at 3151.963 kb on + strand at 3151.975 kb on + strand at 3151.983 kb on - strand at 3152.125 kb on + strand, within Dsui_2945 at 3152.174 kb on - strand at 3152.347 kb on - strand at 3152.353 kb on + strand, within Dsui_2945 at 3152.372 kb on + strand, within Dsui_2945 at 3152.407 kb on + strand, within Dsui_2945 at 3152.408 kb on + strand, within Dsui_2945 at 3152.408 kb on + strand, within Dsui_2945 at 3152.437 kb on - strand at 3152.658 kb on + strand, within Dsui_2946
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,149,019 - Dsui_2943 0.25 -1.1 3,149,060 - +0.9 3,149,247 + Dsui_2943 0.46 +0.1 3,149,326 + Dsui_2943 0.54 +0.0 3,149,336 + Dsui_2943 0.55 +0.6 3,149,406 + Dsui_2943 0.61 +0.9 3,149,462 + Dsui_2943 0.66 +0.8 3,149,479 + Dsui_2943 0.68 +0.4 3,149,597 + Dsui_2943 0.79 -0.7 3,149,635 - Dsui_2943 0.82 -0.1 3,149,654 + Dsui_2943 0.84 +0.7 3,149,681 + Dsui_2943 0.87 +0.1 3,149,689 - +0.9 3,149,689 - -0.1 3,149,689 - +0.9 3,149,730 - -1.1 3,149,743 + +0.0 3,149,781 - -1.4 3,149,968 + +0.2 3,149,968 + +0.0 3,150,066 - +0.8 3,150,124 + -0.0 3,150,126 - -0.2 3,150,140 + -0.4 3,150,239 + Dsui_2944 0.16 -0.2 3,150,239 + Dsui_2944 0.16 +0.2 3,150,247 - +0.8 3,150,277 + Dsui_2944 0.18 -0.1 3,150,385 + Dsui_2944 0.24 +0.5 3,150,397 - Dsui_2944 0.25 +0.8 3,150,438 - Dsui_2944 0.27 +0.8 3,150,475 + Dsui_2944 0.29 -0.2 3,150,483 - Dsui_2944 0.30 -1.2 3,150,541 + Dsui_2944 0.33 +0.9 3,150,597 - Dsui_2944 0.36 -0.2 3,150,705 - Dsui_2944 0.43 -1.2 3,150,721 + Dsui_2944 0.44 +0.1 3,150,721 + Dsui_2944 0.44 +0.2 3,150,729 - Dsui_2944 0.44 -0.7 3,150,798 + Dsui_2944 0.48 +0.3 3,150,840 + Dsui_2944 0.51 +0.2 3,150,848 - Dsui_2944 0.51 -0.2 3,150,848 - Dsui_2944 0.51 +0.8 3,151,159 + Dsui_2944 0.69 +0.1 3,151,159 + Dsui_2944 0.69 +0.4 3,151,160 + Dsui_2944 0.69 -0.2 3,151,160 + Dsui_2944 0.69 -0.0 3,151,369 - Dsui_2944 0.82 -0.7 3,151,557 + -0.5 3,151,617 - +0.8 3,151,629 - +0.8 3,151,786 - +0.8 3,151,811 + +0.2 3,151,870 - +0.8 3,151,907 - -0.2 3,151,950 - -0.2 3,151,955 + +0.1 3,151,963 + +0.5 3,151,975 + +0.2 3,151,983 - -0.8 3,152,125 + Dsui_2945 0.26 +1.0 3,152,174 - +0.8 3,152,347 - -0.2 3,152,353 + Dsui_2945 0.73 +0.2 3,152,372 + Dsui_2945 0.76 +0.8 3,152,407 + Dsui_2945 0.84 +0.1 3,152,408 + Dsui_2945 0.84 +0.3 3,152,408 + Dsui_2945 0.84 -0.3 3,152,437 - +0.8 3,152,658 + Dsui_2946 0.12 +0.7
Or see this region's nucleotide sequence