Strain Fitness in Dechlorosoma suillum PS around Dsui_2892

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2890 and Dsui_2891 are separated by 21 nucleotidesDsui_2891 and Dsui_2892 are separated by 86 nucleotidesDsui_2892 and Dsui_2893 are separated by 67 nucleotides Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103 _2890 Dsui_2891: Dsui_2891 - hemerythrin-like metal-binding domain-containing protein, at 3,088,125 to 3,088,532 _2891 Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596 _2892 Dsui_2893: Dsui_2893 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,092,664 to 3,094,172 _2893 Position (kb) 3088 3089 3090 3091 3092 3093Strain fitness (log2 ratio) -2 -1 0 1at 3087.714 kb on - strand, within Dsui_2890at 3087.778 kb on + strand, within Dsui_2890at 3087.873 kb on + strand, within Dsui_2890at 3087.942 kb on + strandat 3087.983 kb on - strandat 3088.067 kb on + strandat 3088.080 kb on - strandat 3088.143 kb on - strandat 3088.144 kb on - strandat 3088.229 kb on + strand, within Dsui_2891at 3088.420 kb on + strand, within Dsui_2891at 3088.444 kb on + strand, within Dsui_2891at 3088.449 kb on + strandat 3092.680 kb on - strandat 3092.963 kb on - strand, within Dsui_2893at 3092.991 kb on + strandat 3093.092 kb on + strand, within Dsui_2893at 3093.094 kb on - strand, within Dsui_2893at 3093.129 kb on + strandat 3093.169 kb on - strand, within Dsui_2893at 3093.180 kb on - strand, within Dsui_2893at 3093.317 kb on + strandat 3093.358 kb on + strandat 3093.445 kb on - strand, within Dsui_2893

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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3,087,714 - Dsui_2890 0.80 -0.2
3,087,778 + Dsui_2890 0.83 -0.2
3,087,873 + Dsui_2890 0.88 -0.2
3,087,942 + -2.5
3,087,983 - -0.8
3,088,067 + -0.8
3,088,080 - -0.6
3,088,143 - -0.1
3,088,144 - -0.7
3,088,229 + Dsui_2891 0.25 +0.8
3,088,420 + Dsui_2891 0.72 +0.8
3,088,444 + Dsui_2891 0.78 +0.8
3,088,449 + +0.8
3,092,680 - -0.2
3,092,963 - Dsui_2893 0.20 +0.8
3,092,991 + +0.8
3,093,092 + Dsui_2893 0.28 -2.2
3,093,094 - Dsui_2893 0.28 -0.2
3,093,129 + +0.8
3,093,169 - Dsui_2893 0.33 -2.4
3,093,180 - Dsui_2893 0.34 -1.8
3,093,317 + +0.8
3,093,358 + +0.8
3,093,445 - Dsui_2893 0.52 -1.8

Or see this region's nucleotide sequence