Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2871 and Dsui_2872 are separated by 176 nucleotides Dsui_2872 and Dsui_2873 are separated by 10 nucleotides Dsui_2873 and Dsui_2874 are separated by 222 nucleotides
Dsui_2871: Dsui_2871 - FHA domain-containing protein, at 3,065,909 to 3,066,799
_2871
Dsui_2872: Dsui_2872 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,066,976 to 3,067,464
_2872
Dsui_2873: Dsui_2873 - Peroxiredoxin, at 3,067,475 to 3,067,939
_2873
Dsui_2874: Dsui_2874 - putative periplasmic/secreted protein, at 3,068,162 to 3,068,845
_2874
Position (kb)
3066
3067
3068 Strain fitness (log2 ratio)
-2
-1
0
1 at 3066.197 kb on + strand at 3066.624 kb on - strand, within Dsui_2871 at 3066.626 kb on + strand at 3066.665 kb on + strand, within Dsui_2871 at 3066.776 kb on + strand at 3066.833 kb on - strand at 3066.833 kb on - strand at 3066.865 kb on + strand at 3066.890 kb on + strand at 3067.064 kb on - strand, within Dsui_2872 at 3067.066 kb on - strand, within Dsui_2872 at 3067.092 kb on - strand, within Dsui_2872 at 3067.097 kb on - strand, within Dsui_2872 at 3067.243 kb on - strand, within Dsui_2872 at 3067.310 kb on + strand, within Dsui_2872 at 3067.318 kb on - strand, within Dsui_2872 at 3067.433 kb on + strand at 3067.583 kb on - strand, within Dsui_2873 at 3067.937 kb on - strand at 3068.119 kb on + strand at 3068.194 kb on - strand at 3068.244 kb on + strand, within Dsui_2874 at 3068.382 kb on + strand, within Dsui_2874 at 3068.423 kb on + strand, within Dsui_2874 at 3068.423 kb on + strand, within Dsui_2874 at 3068.438 kb on + strand, within Dsui_2874
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,066,197 + +0.8 3,066,624 - Dsui_2871 0.80 -0.2 3,066,626 + -1.2 3,066,665 + Dsui_2871 0.85 +0.8 3,066,776 + -0.2 3,066,833 - +0.7 3,066,833 - -0.2 3,066,865 + -1.2 3,066,890 + +0.8 3,067,064 - Dsui_2872 0.18 -0.4 3,067,066 - Dsui_2872 0.18 -0.6 3,067,092 - Dsui_2872 0.24 -0.5 3,067,097 - Dsui_2872 0.25 -0.9 3,067,243 - Dsui_2872 0.55 +0.2 3,067,310 + Dsui_2872 0.68 -0.3 3,067,318 - Dsui_2872 0.70 -0.9 3,067,433 + -1.2 3,067,583 - Dsui_2873 0.23 +0.6 3,067,937 - -0.2 3,068,119 + +0.3 3,068,194 - -2.7 3,068,244 + Dsui_2874 0.12 -1.1 3,068,382 + Dsui_2874 0.32 -0.6 3,068,423 + Dsui_2874 0.38 -0.8 3,068,423 + Dsui_2874 0.38 +0.2 3,068,438 + Dsui_2874 0.40 +0.4
Or see this region's nucleotide sequence