Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2869 and Dsui_2870 are separated by 99 nucleotides Dsui_2870 and Dsui_2871 are separated by 69 nucleotides
Dsui_2869: Dsui_2869 - transcriptional regulator, at 3,063,842 to 3,064,813
_2869
Dsui_2870: Dsui_2870 - putative permease, at 3,064,913 to 3,065,839
_2870
Dsui_2871: Dsui_2871 - FHA domain-containing protein, at 3,065,909 to 3,066,799
_2871
Position (kb)
3064
3065
3066 Strain fitness (log2 ratio)
-2
-1
0
1 at 3063.946 kb on - strand, within Dsui_2869 at 3063.947 kb on - strand, within Dsui_2869 at 3064.002 kb on + strand, within Dsui_2869 at 3064.194 kb on - strand, within Dsui_2869 at 3064.356 kb on + strand, within Dsui_2869 at 3064.465 kb on + strand, within Dsui_2869 at 3064.545 kb on - strand, within Dsui_2869 at 3064.632 kb on - strand, within Dsui_2869 at 3064.633 kb on + strand at 3064.881 kb on - strand at 3065.006 kb on + strand, within Dsui_2870 at 3065.133 kb on + strand, within Dsui_2870 at 3065.154 kb on + strand, within Dsui_2870 at 3065.267 kb on + strand, within Dsui_2870 at 3065.326 kb on + strand, within Dsui_2870 at 3065.467 kb on + strand, within Dsui_2870 at 3065.482 kb on + strand, within Dsui_2870 at 3065.594 kb on + strand, within Dsui_2870 at 3065.757 kb on + strand at 3065.805 kb on + strand at 3065.847 kb on - strand at 3065.967 kb on - strand at 3065.975 kb on - strand at 3066.197 kb on + strand at 3066.624 kb on - strand, within Dsui_2871 at 3066.626 kb on + strand at 3066.665 kb on + strand, within Dsui_2871 at 3066.776 kb on + strand at 3066.833 kb on - strand at 3066.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,063,946 - Dsui_2869 0.11 -0.2 3,063,947 - Dsui_2869 0.11 +0.6 3,064,002 + Dsui_2869 0.16 -0.8 3,064,194 - Dsui_2869 0.36 -0.2 3,064,356 + Dsui_2869 0.53 -0.8 3,064,465 + Dsui_2869 0.64 -0.8 3,064,545 - Dsui_2869 0.72 +0.6 3,064,632 - Dsui_2869 0.81 +0.0 3,064,633 + +0.8 3,064,881 - +0.8 3,065,006 + Dsui_2870 0.10 -2.3 3,065,133 + Dsui_2870 0.24 -1.0 3,065,154 + Dsui_2870 0.26 -1.8 3,065,267 + Dsui_2870 0.38 -1.3 3,065,326 + Dsui_2870 0.45 -0.2 3,065,467 + Dsui_2870 0.60 -0.8 3,065,482 + Dsui_2870 0.61 +0.4 3,065,594 + Dsui_2870 0.73 -0.2 3,065,757 + -0.8 3,065,805 + -0.9 3,065,847 - -0.2 3,065,967 - -0.8 3,065,975 - +0.8 3,066,197 + +0.8 3,066,624 - Dsui_2871 0.80 -0.2 3,066,626 + -1.2 3,066,665 + Dsui_2871 0.85 +0.8 3,066,776 + -0.2 3,066,833 - +0.7 3,066,833 - -0.2
Or see this region's nucleotide sequence