Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2866 and Dsui_2867 are separated by 271 nucleotides Dsui_2867 and Dsui_2868 are separated by 46 nucleotides
Dsui_2866: Dsui_2866 - outer membrane receptor for ferrienterochelin and colicins, at 3,058,922 to 3,060,874
_2866
Dsui_2867: Dsui_2867 - surface antigen family protein, at 3,061,146 to 3,061,844
_2867
Dsui_2868: Dsui_2868 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein, at 3,061,891 to 3,063,858
_2868
Position (kb)
3061
3062 Strain fitness (log2 ratio)
-2
-1
0
1 at 3060.302 kb on - strand, within Dsui_2866 at 3060.468 kb on - strand at 3060.482 kb on - strand, within Dsui_2866 at 3060.544 kb on - strand, within Dsui_2866 at 3060.605 kb on - strand, within Dsui_2866 at 3060.605 kb on - strand, within Dsui_2866 at 3060.716 kb on - strand at 3060.797 kb on + strand at 3060.891 kb on - strand at 3061.082 kb on + strand at 3061.136 kb on + strand at 3061.424 kb on + strand, within Dsui_2867 at 3061.424 kb on + strand, within Dsui_2867 at 3061.472 kb on + strand, within Dsui_2867 at 3061.555 kb on - strand at 3061.750 kb on + strand, within Dsui_2867 at 3061.755 kb on + strand at 3061.805 kb on + strand at 3061.888 kb on + strand at 3061.938 kb on + strand at 3062.018 kb on + strand at 3062.256 kb on + strand, within Dsui_2868 at 3062.366 kb on + strand, within Dsui_2868 at 3062.389 kb on + strand, within Dsui_2868 at 3062.730 kb on - strand, within Dsui_2868 at 3062.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 3,060,302 - Dsui_2866 0.71 -1.2 3,060,468 - +0.8 3,060,482 - Dsui_2866 0.80 -1.2 3,060,544 - Dsui_2866 0.83 -2.0 3,060,605 - Dsui_2866 0.86 -0.8 3,060,605 - Dsui_2866 0.86 -0.2 3,060,716 - +0.8 3,060,797 + +0.8 3,060,891 - +0.8 3,061,082 + -0.8 3,061,136 + -1.5 3,061,424 + Dsui_2867 0.40 -0.2 3,061,424 + Dsui_2867 0.40 -0.8 3,061,472 + Dsui_2867 0.47 +0.8 3,061,555 - +0.8 3,061,750 + Dsui_2867 0.86 -1.2 3,061,755 + -0.2 3,061,805 + -0.2 3,061,888 + +0.8 3,061,938 + -0.4 3,062,018 + -2.4 3,062,256 + Dsui_2868 0.19 +0.8 3,062,366 + Dsui_2868 0.24 -0.8 3,062,389 + Dsui_2868 0.25 -0.8 3,062,730 - Dsui_2868 0.43 -1.2 3,062,839 - +0.8
Or see this region's nucleotide sequence