Strain Fitness in Dechlorosoma suillum PS around Dsui_2822

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2821 and Dsui_2822 overlap by 4 nucleotidesDsui_2822 and Dsui_2823 are separated by 73 nucleotides Dsui_2821: Dsui_2821 - K+ transport system, NAD-binding component, at 2,997,348 to 2,998,385 _2821 Dsui_2822: Dsui_2822 - hypothetical protein, at 2,998,382 to 2,998,951 _2822 Dsui_2823: Dsui_2823 - DNA internalization-related competence protein ComEC/Rec2, at 2,999,025 to 3,000,758 _2823 Position (kb) 2998 2999Strain fitness (log2 ratio) -2 -1 0 1at 2997.512 kb on + strandat 2997.520 kb on - strand, within Dsui_2821at 2997.629 kb on + strandat 2997.637 kb on - strand, within Dsui_2821at 2997.637 kb on - strandat 2997.704 kb on + strandat 2997.828 kb on - strand, within Dsui_2821at 2997.998 kb on - strand, within Dsui_2821at 2998.212 kb on - strand, within Dsui_2821at 2998.323 kb on + strandat 2998.333 kb on + strandat 2998.490 kb on - strand, within Dsui_2822at 2998.534 kb on - strand, within Dsui_2822at 2998.647 kb on - strand, within Dsui_2822at 2998.697 kb on + strandat 2998.939 kb on - strandat 2998.983 kb on + strandat 2998.983 kb on + strandat 2998.991 kb on - strandat 2999.037 kb on + strandat 2999.256 kb on - strandat 2999.747 kb on - strand, within Dsui_2823at 2999.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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2,997,512 + +0.9
2,997,520 - Dsui_2821 0.17 +0.9
2,997,629 + +0.9
2,997,637 - Dsui_2821 0.28 +0.9
2,997,637 - +0.9
2,997,704 + -0.7
2,997,828 - Dsui_2821 0.46 -0.1
2,997,998 - Dsui_2821 0.63 -1.9
2,998,212 - Dsui_2821 0.83 -0.1
2,998,323 + -0.7
2,998,333 + -0.1
2,998,490 - Dsui_2822 0.19 -0.7
2,998,534 - Dsui_2822 0.27 -2.6
2,998,647 - Dsui_2822 0.46 +0.9
2,998,697 + +0.9
2,998,939 - -1.1
2,998,983 + -1.1
2,998,983 + +0.9
2,998,991 - -0.7
2,999,037 + -1.1
2,999,256 - +0.9
2,999,747 - Dsui_2823 0.42 -0.1
2,999,830 - +0.9

Or see this region's nucleotide sequence