Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2812 and Dsui_2813 are separated by 4 nucleotides Dsui_2813 and Dsui_2814 are separated by 231 nucleotides
Dsui_2812: Dsui_2812 - conserved hypothetical integral membrane protein, at 2,985,568 to 2,986,683
_2812
Dsui_2813: Dsui_2813 - exopolyphosphatase, at 2,986,688 to 2,988,223
_2813
Dsui_2814: Dsui_2814 - polyphosphate kinase 1, at 2,988,455 to 2,990,563
_2814
Position (kb)
2986
2987
2988
2989 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2985.712 kb on + strand at 2985.793 kb on - strand, within Dsui_2812 at 2985.812 kb on + strand at 2985.847 kb on - strand, within Dsui_2812 at 2985.902 kb on + strand at 2985.927 kb on + strand at 2986.149 kb on - strand, within Dsui_2812 at 2986.155 kb on - strand, within Dsui_2812 at 2986.160 kb on - strand, within Dsui_2812 at 2986.198 kb on - strand, within Dsui_2812 at 2986.325 kb on - strand, within Dsui_2812 at 2986.500 kb on + strand at 2986.508 kb on - strand, within Dsui_2812 at 2986.508 kb on - strand at 2986.518 kb on + strand, within Dsui_2812 at 2986.651 kb on + strand at 2986.655 kb on - strand at 2986.659 kb on - strand at 2986.828 kb on + strand at 2986.898 kb on + strand, within Dsui_2813 at 2986.958 kb on - strand, within Dsui_2813 at 2987.153 kb on + strand, within Dsui_2813 at 2987.161 kb on - strand, within Dsui_2813 at 2987.161 kb on - strand, within Dsui_2813 at 2987.187 kb on + strand, within Dsui_2813 at 2987.268 kb on + strand, within Dsui_2813 at 2987.730 kb on - strand, within Dsui_2813 at 2987.732 kb on + strand, within Dsui_2813 at 2987.828 kb on + strand at 2987.833 kb on - strand, within Dsui_2813 at 2987.923 kb on - strand, within Dsui_2813 at 2987.923 kb on - strand, within Dsui_2813 at 2987.925 kb on + strand, within Dsui_2813 at 2987.952 kb on - strand, within Dsui_2813 at 2988.102 kb on - strand at 2988.135 kb on + strand at 2988.162 kb on - strand at 2988.196 kb on - strand at 2988.263 kb on - strand at 2988.431 kb on + strand at 2988.431 kb on + strand at 2988.431 kb on + strand at 2988.439 kb on - strand at 2988.439 kb on - strand at 2988.439 kb on - strand at 2988.510 kb on + strand at 2988.598 kb on + strand at 2988.788 kb on - strand, within Dsui_2814 at 2988.908 kb on + strand, within Dsui_2814 at 2988.927 kb on - strand at 2989.078 kb on + strand, within Dsui_2814 at 2989.106 kb on - strand, within Dsui_2814 at 2989.145 kb on + strand, within Dsui_2814 at 2989.145 kb on - strand, within Dsui_2814
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,985,712 + +0.9 2,985,793 - Dsui_2812 0.20 -0.7 2,985,812 + +0.9 2,985,847 - Dsui_2812 0.25 +0.9 2,985,902 + -0.1 2,985,927 + -1.1 2,986,149 - Dsui_2812 0.52 +1.9 2,986,155 - Dsui_2812 0.53 +0.9 2,986,160 - Dsui_2812 0.53 +0.9 2,986,198 - Dsui_2812 0.56 +0.9 2,986,325 - Dsui_2812 0.68 +0.9 2,986,500 + -0.1 2,986,508 - Dsui_2812 0.84 -1.2 2,986,508 - -0.1 2,986,518 + Dsui_2812 0.85 -0.1 2,986,651 + -0.1 2,986,655 - +2.1 2,986,659 - +1.5 2,986,828 + +0.9 2,986,898 + Dsui_2813 0.14 +0.9 2,986,958 - Dsui_2813 0.18 +0.5 2,987,153 + Dsui_2813 0.30 -1.1 2,987,161 - Dsui_2813 0.31 +0.7 2,987,161 - Dsui_2813 0.31 +1.1 2,987,187 + Dsui_2813 0.32 -2.2 2,987,268 + Dsui_2813 0.38 -0.1 2,987,730 - Dsui_2813 0.68 +1.9 2,987,732 + Dsui_2813 0.68 -1.9 2,987,828 + -0.7 2,987,833 - Dsui_2813 0.75 +0.4 2,987,923 - Dsui_2813 0.80 +0.1 2,987,923 - Dsui_2813 0.80 -0.2 2,987,925 + Dsui_2813 0.81 +0.9 2,987,952 - Dsui_2813 0.82 +0.0 2,988,102 - +0.6 2,988,135 + -0.1 2,988,162 - +1.1 2,988,196 - +0.6 2,988,263 - +0.5 2,988,431 + -0.2 2,988,431 + -1.3 2,988,431 + -0.3 2,988,439 - -0.7 2,988,439 - -1.7 2,988,439 - -0.7 2,988,510 + -0.7 2,988,598 + -0.9 2,988,788 - Dsui_2814 0.16 -1.7 2,988,908 + Dsui_2814 0.21 +0.8 2,988,927 - +0.9 2,989,078 + Dsui_2814 0.30 +0.5 2,989,106 - Dsui_2814 0.31 -0.1 2,989,145 + Dsui_2814 0.33 +0.6 2,989,145 - Dsui_2814 0.33 +0.9
Or see this region's nucleotide sequence