Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2808 and Dsui_2809 are separated by 59 nucleotides Dsui_2809 and Dsui_2810 overlap by 4 nucleotides Dsui_2810 and Dsui_2811 are separated by 19 nucleotides
Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211
_2808
Dsui_2809: Dsui_2809 - ABC-type uncharacterized transport system, auxiliary component, at 2,983,271 to 2,983,858
_2809
Dsui_2810: Dsui_2810 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 2,983,855 to 2,984,778
_2810
Dsui_2811: Dsui_2811 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 2,984,798 to 2,985,571
_2811
Position (kb)
2983
2984 Strain fitness (log2 ratio)
-1
0
1 at 2982.343 kb on + strand, within Dsui_2808 at 2982.507 kb on + strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.564 kb on - strand, within Dsui_2808 at 2982.700 kb on + strand at 2982.826 kb on - strand, within Dsui_2808 at 2983.054 kb on + strand at 2983.122 kb on + strand at 2983.741 kb on - strand, within Dsui_2809 at 2983.827 kb on - strand at 2983.861 kb on - strand at 2984.498 kb on - strand, within Dsui_2810 at 2984.511 kb on + strand at 2984.718 kb on - strand at 2984.734 kb on - strand at 2984.737 kb on + strand at 2984.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,982,343 + Dsui_2808 0.48 +0.9 2,982,507 + Dsui_2808 0.58 +0.9 2,982,510 - Dsui_2808 0.58 -0.2 2,982,510 - Dsui_2808 0.58 +0.8 2,982,510 - Dsui_2808 0.58 -1.3 2,982,564 - Dsui_2808 0.61 +0.5 2,982,700 + +0.9 2,982,826 - Dsui_2808 0.77 -1.7 2,983,054 + +0.9 2,983,122 + +0.9 2,983,741 - Dsui_2809 0.80 -1.4 2,983,827 - -0.1 2,983,861 - -1.1 2,984,498 - Dsui_2810 0.70 +0.9 2,984,511 + +0.9 2,984,718 - +0.9 2,984,734 - -1.1 2,984,737 + +0.9 2,984,803 - +0.9
Or see this region's nucleotide sequence