Strain Fitness in Dechlorosoma suillum PS around Dsui_2807

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2806 and Dsui_2807 are separated by 130 nucleotidesDsui_2807 and Dsui_2808 are separated by 71 nucleotides Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562 _2806 Dsui_2807: Dsui_2807 - enoyl-CoA hydratase/carnithine racemase, at 2,980,693 to 2,981,481 _2807 Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211 _2808 Position (kb) 2980 2981 2982Strain fitness (log2 ratio) -2 -1 0 1at 2979.715 kb on - strand, within Dsui_2806at 2979.753 kb on - strand, within Dsui_2806at 2979.803 kb on + strandat 2979.811 kb on - strand, within Dsui_2806at 2979.932 kb on - strand, within Dsui_2806at 2979.932 kb on - strand, within Dsui_2806at 2979.952 kb on - strand, within Dsui_2806at 2980.088 kb on + strandat 2980.121 kb on - strand, within Dsui_2806at 2980.379 kb on + strandat 2980.553 kb on - strandat 2980.782 kb on - strand, within Dsui_2807at 2980.953 kb on - strand, within Dsui_2807at 2980.967 kb on + strand, within Dsui_2807at 2981.048 kb on + strandat 2981.056 kb on - strand, within Dsui_2807at 2981.181 kb on - strand, within Dsui_2807at 2981.227 kb on - strand, within Dsui_2807at 2981.274 kb on + strand, within Dsui_2807at 2981.384 kb on - strand, within Dsui_2807at 2981.389 kb on - strand, within Dsui_2807at 2981.389 kb on - strand, within Dsui_2807at 2981.465 kb on + strandat 2981.468 kb on - strandat 2981.517 kb on - strandat 2981.550 kb on + strandat 2981.598 kb on + strandat 2981.657 kb on + strandat 2981.665 kb on - strandat 2981.665 kb on - strandat 2981.675 kb on - strandat 2981.705 kb on + strandat 2981.778 kb on + strandat 2981.894 kb on - strand, within Dsui_2808at 2981.952 kb on + strand, within Dsui_2808at 2981.971 kb on + strand, within Dsui_2808at 2981.973 kb on - strand, within Dsui_2808at 2982.129 kb on - strand, within Dsui_2808at 2982.232 kb on + strand, within Dsui_2808at 2982.343 kb on + strand, within Dsui_2808

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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2,979,715 - Dsui_2806 0.72 +0.9
2,979,753 - Dsui_2806 0.73 -2.2
2,979,803 + -0.1
2,979,811 - Dsui_2806 0.75 -1.1
2,979,932 - Dsui_2806 0.79 +0.4
2,979,932 - Dsui_2806 0.79 +0.9
2,979,952 - Dsui_2806 0.80 -0.1
2,980,088 + +0.9
2,980,121 - Dsui_2806 0.85 -0.7
2,980,379 + -0.1
2,980,553 - +0.9
2,980,782 - Dsui_2807 0.11 +0.2
2,980,953 - Dsui_2807 0.33 -2.2
2,980,967 + Dsui_2807 0.35 -0.7
2,981,048 + +0.9
2,981,056 - Dsui_2807 0.46 +0.2
2,981,181 - Dsui_2807 0.62 -1.9
2,981,227 - Dsui_2807 0.68 -1.1
2,981,274 + Dsui_2807 0.74 +0.9
2,981,384 - Dsui_2807 0.88 -0.7
2,981,389 - Dsui_2807 0.88 +0.9
2,981,389 - Dsui_2807 0.88 -1.4
2,981,465 + +0.9
2,981,468 - -0.1
2,981,517 - +0.9
2,981,550 + -2.1
2,981,598 + -0.7
2,981,657 + -0.1
2,981,665 - +0.9
2,981,665 - -0.3
2,981,675 - -0.4
2,981,705 + -0.1
2,981,778 + -0.7
2,981,894 - Dsui_2808 0.21 -0.2
2,981,952 + Dsui_2808 0.24 +0.9
2,981,971 + Dsui_2808 0.25 -0.1
2,981,973 - Dsui_2808 0.25 +0.3
2,982,129 - Dsui_2808 0.35 -0.4
2,982,232 + Dsui_2808 0.41 +0.9
2,982,343 + Dsui_2808 0.48 +0.9

Or see this region's nucleotide sequence