Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2752 and Dsui_2753 are separated by 5 nucleotides Dsui_2753 and Dsui_2754 are separated by 262 nucleotides Dsui_2754 and Dsui_2755 are separated by 110 nucleotides Dsui_2755 and Dsui_2756 are separated by 89 nucleotides
Dsui_2752: Dsui_2752 - ABC-type multidrug transport system, ATPase and permease component, at 2,910,746 to 2,912,953
_2752
Dsui_2753: Dsui_2753 - protein of unknown function (DUF1854), at 2,912,959 to 2,913,429
_2753
Dsui_2754: Dsui_2754 - collagenase-like protease, at 2,913,692 to 2,915,578
_2754
Dsui_2755: Dsui_2755 - hypothetical protein, at 2,915,689 to 2,915,889
_2755
Dsui_2756: Dsui_2756 - hypothetical protein, at 2,915,979 to 2,916,593
_2756
Position (kb)
2913
2914
2915
2916 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2912.890 kb on + strand at 2912.890 kb on + strand at 2913.583 kb on + strand at 2913.583 kb on + strand at 2913.617 kb on - strand at 2913.622 kb on - strand at 2913.644 kb on + strand at 2913.662 kb on - strand at 2914.038 kb on + strand, within Dsui_2754 at 2914.128 kb on + strand, within Dsui_2754 at 2914.200 kb on + strand, within Dsui_2754 at 2914.395 kb on - strand, within Dsui_2754 at 2914.477 kb on + strand, within Dsui_2754 at 2914.488 kb on + strand, within Dsui_2754 at 2914.548 kb on + strand, within Dsui_2754 at 2914.598 kb on - strand at 2914.610 kb on - strand, within Dsui_2754 at 2914.735 kb on + strand, within Dsui_2754 at 2914.795 kb on + strand, within Dsui_2754 at 2914.810 kb on - strand, within Dsui_2754 at 2914.843 kb on - strand, within Dsui_2754 at 2914.930 kb on - strand at 2914.962 kb on + strand, within Dsui_2754 at 2914.994 kb on - strand, within Dsui_2754 at 2915.022 kb on - strand, within Dsui_2754 at 2915.106 kb on + strand, within Dsui_2754 at 2915.296 kb on - strand at 2915.296 kb on - strand, within Dsui_2754 at 2915.423 kb on - strand at 2915.423 kb on - strand at 2915.423 kb on - strand at 2915.423 kb on - strand at 2915.423 kb on - strand at 2915.467 kb on - strand at 2915.479 kb on - strand at 2915.571 kb on - strand at 2915.639 kb on - strand at 2915.963 kb on - strand at 2915.992 kb on + strand at 2916.035 kb on - strand at 2916.157 kb on + strand, within Dsui_2756 at 2916.478 kb on + strand, within Dsui_2756 at 2916.505 kb on + strand, within Dsui_2756
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,912,890 + +1.3 2,912,890 + +1.4 2,913,583 + +0.8 2,913,583 + +0.5 2,913,617 - -0.1 2,913,622 - -0.1 2,913,644 + -0.0 2,913,662 - -0.7 2,914,038 + Dsui_2754 0.18 +1.0 2,914,128 + Dsui_2754 0.23 +0.2 2,914,200 + Dsui_2754 0.27 -0.2 2,914,395 - Dsui_2754 0.37 -1.9 2,914,477 + Dsui_2754 0.42 +0.6 2,914,488 + Dsui_2754 0.42 +0.8 2,914,548 + Dsui_2754 0.45 +0.9 2,914,598 - +0.9 2,914,610 - Dsui_2754 0.49 -0.7 2,914,735 + Dsui_2754 0.55 +0.5 2,914,795 + Dsui_2754 0.58 +0.2 2,914,810 - Dsui_2754 0.59 +0.9 2,914,843 - Dsui_2754 0.61 -0.1 2,914,930 - +0.9 2,914,962 + Dsui_2754 0.67 +1.1 2,914,994 - Dsui_2754 0.69 -0.1 2,915,022 - Dsui_2754 0.70 +0.9 2,915,106 + Dsui_2754 0.75 +0.1 2,915,296 - +0.9 2,915,296 - Dsui_2754 0.85 -0.1 2,915,423 - +0.9 2,915,423 - +0.9 2,915,423 - -0.7 2,915,423 - +0.9 2,915,423 - +0.9 2,915,467 - -1.1 2,915,479 - -1.1 2,915,571 - -1.9 2,915,639 - +0.9 2,915,963 - +0.9 2,915,992 + +2.8 2,916,035 - -0.7 2,916,157 + Dsui_2756 0.29 -0.7 2,916,478 + Dsui_2756 0.81 -0.6 2,916,505 + Dsui_2756 0.86 +2.5
Or see this region's nucleotide sequence