Strain Fitness in Dechlorosoma suillum PS around Dsui_2725

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2723 and Dsui_2724 are separated by 36 nucleotidesDsui_2724 and Dsui_2725 are separated by 191 nucleotidesDsui_2725 and Dsui_2726 overlap by 11 nucleotidesDsui_2726 and Dsui_2727 overlap by 20 nucleotides Dsui_2723: Dsui_2723 - transcription termination factor NusA, at 2,878,955 to 2,880,427 _2723 Dsui_2724: Dsui_2724 - hypothetical protein, at 2,880,464 to 2,880,925 _2724 Dsui_2725: Dsui_2725 - pseudouridine synthase family protein, at 2,881,117 to 2,882,262 _2725 Dsui_2726: Dsui_2726 - segregation and condensation protein B, at 2,882,252 to 2,882,809 _2726 Dsui_2727: Dsui_2727 - hypothetical protein, at 2,882,790 to 2,883,713 _2727 Position (kb) 2881 2882 2883Strain fitness (log2 ratio) -1 0 1 2 3at 2880.457 kb on - strandat 2880.491 kb on - strandat 2880.922 kb on - strandat 2880.922 kb on - strandat 2881.054 kb on + strandat 2881.157 kb on + strandat 2882.283 kb on - strandat 2882.331 kb on - strand, within Dsui_2726at 2882.495 kb on - strand, within Dsui_2726at 2882.870 kb on - strandat 2882.900 kb on - strand, within Dsui_2727at 2882.958 kb on - strand, within Dsui_2727at 2882.968 kb on - strand, within Dsui_2727at 2883.073 kb on - strand, within Dsui_2727at 2883.228 kb on - strand, within Dsui_2727

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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2,880,457 - +0.1
2,880,491 - +1.9
2,880,922 - +0.2
2,880,922 - +3.0
2,881,054 + -1.7
2,881,157 + -0.9
2,882,283 - -0.2
2,882,331 - Dsui_2726 0.14 +0.1
2,882,495 - Dsui_2726 0.44 -1.6
2,882,870 - -0.4
2,882,900 - Dsui_2727 0.12 +0.8
2,882,958 - Dsui_2727 0.18 +0.2
2,882,968 - Dsui_2727 0.19 -0.3
2,883,073 - Dsui_2727 0.31 -1.5
2,883,228 - Dsui_2727 0.47 +1.3

Or see this region's nucleotide sequence