Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2711 and Dsui_2712 are separated by 2 nucleotides Dsui_2712 and Dsui_2713 are separated by 260 nucleotides
Dsui_2711: Dsui_2711 - succinyl-diaminopimelate desuccinylase, at 2,867,837 to 2,868,988
_2711
Dsui_2712: Dsui_2712 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 2,868,991 to 2,869,887
_2712
Dsui_2713: Dsui_2713 - membrane protease subunit, stomatin/prohibitin, at 2,870,148 to 2,871,041
_2713
Position (kb)
2868
2869
2870 Strain fitness (log2 ratio)
-2
-1
0
1 at 2869.038 kb on + strand at 2869.141 kb on - strand, within Dsui_2712 at 2869.141 kb on - strand, within Dsui_2712 at 2869.187 kb on - strand, within Dsui_2712 at 2869.190 kb on - strand, within Dsui_2712 at 2869.194 kb on + strand, within Dsui_2712 at 2869.261 kb on + strand, within Dsui_2712 at 2869.294 kb on - strand, within Dsui_2712 at 2869.466 kb on + strand, within Dsui_2712 at 2869.495 kb on - strand, within Dsui_2712 at 2869.502 kb on + strand, within Dsui_2712 at 2869.506 kb on - strand at 2869.661 kb on + strand, within Dsui_2712 at 2869.702 kb on - strand, within Dsui_2712 at 2869.702 kb on - strand, within Dsui_2712 at 2869.745 kb on - strand, within Dsui_2712 at 2869.813 kb on + strand at 2869.889 kb on + strand at 2869.891 kb on - strand at 2869.940 kb on - strand at 2870.006 kb on + strand at 2870.027 kb on - strand at 2870.117 kb on - strand at 2870.201 kb on - strand at 2870.222 kb on - strand at 2870.254 kb on + strand, within Dsui_2713 at 2870.262 kb on - strand, within Dsui_2713 at 2870.340 kb on + strand, within Dsui_2713 at 2870.357 kb on + strand, within Dsui_2713 at 2870.471 kb on - strand, within Dsui_2713 at 2870.574 kb on + strand, within Dsui_2713 at 2870.628 kb on - strand, within Dsui_2713 at 2870.656 kb on - strand, within Dsui_2713 at 2870.726 kb on + strand, within Dsui_2713 at 2870.726 kb on + strand, within Dsui_2713 at 2870.818 kb on - strand, within Dsui_2713 at 2870.878 kb on - strand, within Dsui_2713
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,869,038 + -0.8 2,869,141 - Dsui_2712 0.17 -1.9 2,869,141 - Dsui_2712 0.17 -0.7 2,869,187 - Dsui_2712 0.22 -0.7 2,869,190 - Dsui_2712 0.22 +0.9 2,869,194 + Dsui_2712 0.23 +1.3 2,869,261 + Dsui_2712 0.30 +0.9 2,869,294 - Dsui_2712 0.34 -0.1 2,869,466 + Dsui_2712 0.53 -0.1 2,869,495 - Dsui_2712 0.56 -0.1 2,869,502 + Dsui_2712 0.57 -0.1 2,869,506 - +0.9 2,869,661 + Dsui_2712 0.75 +0.4 2,869,702 - Dsui_2712 0.79 -0.7 2,869,702 - Dsui_2712 0.79 +0.9 2,869,745 - Dsui_2712 0.84 -0.7 2,869,813 + +0.2 2,869,889 + +0.3 2,869,891 - -0.1 2,869,940 - +0.9 2,870,006 + +0.9 2,870,027 - +0.9 2,870,117 - -1.1 2,870,201 - +0.9 2,870,222 - -1.9 2,870,254 + Dsui_2713 0.12 -0.7 2,870,262 - Dsui_2713 0.13 +0.9 2,870,340 + Dsui_2713 0.21 +0.9 2,870,357 + Dsui_2713 0.23 +0.9 2,870,471 - Dsui_2713 0.36 +0.9 2,870,574 + Dsui_2713 0.48 -1.4 2,870,628 - Dsui_2713 0.54 -0.7 2,870,656 - Dsui_2713 0.57 -2.1 2,870,726 + Dsui_2713 0.65 -0.7 2,870,726 + Dsui_2713 0.65 -0.1 2,870,818 - Dsui_2713 0.75 -0.7 2,870,878 - Dsui_2713 0.82 -0.7
Or see this region's nucleotide sequence