Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2679 and Dsui_2680 are separated by 3 nucleotides Dsui_2680 and Dsui_2681 overlap by 20 nucleotides Dsui_2681 and Dsui_2682 are separated by 4 nucleotides Dsui_2682 and Dsui_2683 are separated by 4 nucleotides
Dsui_2679: Dsui_2679 - rRNA methylase, at 2,831,642 to 2,832,418
_2679
Dsui_2680: Dsui_2680 - ribonuclease HII, at 2,832,422 to 2,833,018
_2680
Dsui_2681: Dsui_2681 - lipid-A-disaccharide synthase, at 2,832,999 to 2,834,186
_2681
Dsui_2682: Dsui_2682 - acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase, at 2,834,191 to 2,834,961
_2682
Dsui_2683: Dsui_2683 - beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ, at 2,834,966 to 2,835,403
_2683
Position (kb)
2832
2833
2834
2835 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2832.060 kb on + strand, within Dsui_2679 at 2832.062 kb on + strand, within Dsui_2679 at 2832.114 kb on + strand, within Dsui_2679 at 2832.179 kb on + strand, within Dsui_2679 at 2832.179 kb on + strand, within Dsui_2679 at 2832.187 kb on - strand, within Dsui_2679 at 2832.201 kb on - strand, within Dsui_2679 at 2832.234 kb on + strand, within Dsui_2679 at 2832.247 kb on - strand, within Dsui_2679 at 2832.347 kb on + strand at 2832.420 kb on + strand at 2832.420 kb on + strand at 2832.428 kb on - strand at 2832.443 kb on - strand at 2832.460 kb on + strand at 2832.492 kb on - strand, within Dsui_2680 at 2832.523 kb on + strand, within Dsui_2680 at 2832.544 kb on + strand, within Dsui_2680 at 2832.585 kb on - strand, within Dsui_2680 at 2832.611 kb on - strand, within Dsui_2680 at 2832.651 kb on + strand, within Dsui_2680 at 2832.659 kb on - strand, within Dsui_2680 at 2832.814 kb on - strand, within Dsui_2680 at 2832.859 kb on - strand, within Dsui_2680 at 2832.911 kb on - strand, within Dsui_2680
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,832,060 + Dsui_2679 0.54 +0.8 2,832,062 + Dsui_2679 0.54 -1.2 2,832,114 + Dsui_2679 0.61 +0.8 2,832,179 + Dsui_2679 0.69 -1.5 2,832,179 + Dsui_2679 0.69 +0.8 2,832,187 - Dsui_2679 0.70 +2.3 2,832,201 - Dsui_2679 0.72 +2.5 2,832,234 + Dsui_2679 0.76 -0.7 2,832,247 - Dsui_2679 0.78 +1.9 2,832,347 + -0.2 2,832,420 + -1.5 2,832,420 + +0.8 2,832,428 - -0.4 2,832,443 - +0.0 2,832,460 + +0.8 2,832,492 - Dsui_2680 0.12 +1.2 2,832,523 + Dsui_2680 0.17 -1.5 2,832,544 + Dsui_2680 0.20 -2.2 2,832,585 - Dsui_2680 0.27 +1.0 2,832,611 - Dsui_2680 0.32 -0.1 2,832,651 + Dsui_2680 0.38 +0.8 2,832,659 - Dsui_2680 0.40 -0.2 2,832,814 - Dsui_2680 0.66 +0.5 2,832,859 - Dsui_2680 0.73 +0.6 2,832,911 - Dsui_2680 0.82 -0.0
Or see this region's nucleotide sequence