Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2666 and Dsui_2667 are separated by 12 nucleotides Dsui_2667 and Dsui_2668 overlap by 4 nucleotides Dsui_2668 and Dsui_2669 are separated by 115 nucleotides Dsui_2669 and Dsui_2670 are separated by 89 nucleotides
Dsui_2666: Dsui_2666 - putative transcriptional regulator, at 2,818,458 to 2,818,901
_2666
Dsui_2667: Dsui_2667 - acetyltransferase, at 2,818,914 to 2,819,447
_2667
Dsui_2668: Dsui_2668 - putative phosphatase, at 2,819,444 to 2,821,390
_2668
Dsui_2669: Dsui_2669 - ankyrin repeat-containing protein, at 2,821,506 to 2,822,252
_2669
Dsui_2670: Dsui_2670 - GMP synthase (glutamine-hydrolyzing), at 2,822,342 to 2,823,976
_2670
Position (kb)
2819
2820
2821
2822 Strain fitness (log2 ratio)
-2
-1
0
1 at 2818.447 kb on + strand at 2818.455 kb on + strand at 2818.471 kb on - strand at 2818.569 kb on - strand, within Dsui_2666 at 2818.597 kb on - strand, within Dsui_2666 at 2818.693 kb on - strand, within Dsui_2666 at 2818.754 kb on - strand, within Dsui_2666 at 2818.758 kb on + strand, within Dsui_2666 at 2819.006 kb on - strand at 2819.118 kb on + strand, within Dsui_2667 at 2819.274 kb on + strand, within Dsui_2667 at 2819.274 kb on + strand, within Dsui_2667 at 2819.389 kb on + strand, within Dsui_2667 at 2819.407 kb on + strand at 2819.455 kb on - strand at 2819.617 kb on + strand at 2819.662 kb on + strand at 2819.964 kb on + strand, within Dsui_2668 at 2820.061 kb on + strand at 2820.104 kb on - strand at 2820.128 kb on - strand at 2820.211 kb on + strand at 2820.239 kb on - strand at 2820.333 kb on + strand at 2820.368 kb on + strand, within Dsui_2668 at 2820.369 kb on + strand, within Dsui_2668 at 2820.371 kb on + strand at 2820.400 kb on + strand at 2820.401 kb on + strand at 2820.439 kb on - strand at 2820.460 kb on + strand, within Dsui_2668 at 2820.622 kb on - strand at 2820.653 kb on + strand, within Dsui_2668 at 2820.653 kb on + strand at 2820.665 kb on + strand at 2820.666 kb on - strand at 2820.692 kb on + strand at 2821.125 kb on + strand at 2821.339 kb on + strand at 2821.546 kb on + strand at 2821.638 kb on - strand at 2821.655 kb on + strand, within Dsui_2669 at 2821.824 kb on + strand, within Dsui_2669 at 2821.831 kb on + strand, within Dsui_2669 at 2821.831 kb on + strand, within Dsui_2669 at 2821.831 kb on + strand, within Dsui_2669 at 2821.831 kb on + strand, within Dsui_2669 at 2821.893 kb on - strand, within Dsui_2669 at 2821.924 kb on + strand, within Dsui_2669 at 2821.924 kb on + strand, within Dsui_2669 at 2821.924 kb on + strand, within Dsui_2669 at 2821.929 kb on + strand, within Dsui_2669 at 2822.075 kb on - strand at 2822.135 kb on - strand, within Dsui_2669 at 2822.135 kb on - strand, within Dsui_2669 at 2822.185 kb on - strand at 2822.241 kb on + strand at 2822.303 kb on + strand at 2822.311 kb on - strand at 2822.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,818,447 + -0.5 2,818,455 + -0.4 2,818,471 - -0.2 2,818,569 - Dsui_2666 0.25 -0.2 2,818,597 - Dsui_2666 0.31 -0.7 2,818,693 - Dsui_2666 0.53 -2.2 2,818,754 - Dsui_2666 0.67 -0.2 2,818,758 + Dsui_2666 0.68 -0.7 2,819,006 - -1.2 2,819,118 + Dsui_2667 0.38 +0.8 2,819,274 + Dsui_2667 0.67 -2.2 2,819,274 + Dsui_2667 0.67 +0.8 2,819,389 + Dsui_2667 0.89 -0.8 2,819,407 + +0.8 2,819,455 - -0.8 2,819,617 + +0.8 2,819,662 + +0.8 2,819,964 + Dsui_2668 0.27 -0.2 2,820,061 + +0.8 2,820,104 - -0.7 2,820,128 - +0.8 2,820,211 + +0.8 2,820,239 - +0.8 2,820,333 + -0.7 2,820,368 + Dsui_2668 0.47 -2.5 2,820,369 + Dsui_2668 0.48 -0.2 2,820,371 + +0.8 2,820,400 + +0.8 2,820,401 + -1.2 2,820,439 - +0.8 2,820,460 + Dsui_2668 0.52 -0.7 2,820,622 - +0.8 2,820,653 + Dsui_2668 0.62 -0.2 2,820,653 + +0.8 2,820,665 + -0.7 2,820,666 - -1.2 2,820,692 + -0.2 2,821,125 + +0.8 2,821,339 + -0.2 2,821,546 + -2.2 2,821,638 - +0.8 2,821,655 + Dsui_2669 0.20 -0.2 2,821,824 + Dsui_2669 0.43 -2.6 2,821,831 + Dsui_2669 0.44 -0.6 2,821,831 + Dsui_2669 0.44 -0.2 2,821,831 + Dsui_2669 0.44 -2.2 2,821,831 + Dsui_2669 0.44 -1.5 2,821,893 - Dsui_2669 0.52 -0.8 2,821,924 + Dsui_2669 0.56 -1.2 2,821,924 + Dsui_2669 0.56 -1.2 2,821,924 + Dsui_2669 0.56 +0.8 2,821,929 + Dsui_2669 0.57 -1.8 2,822,075 - +0.8 2,822,135 - Dsui_2669 0.84 +0.8 2,822,135 - Dsui_2669 0.84 -0.8 2,822,185 - +0.8 2,822,241 + +0.2 2,822,303 + +0.8 2,822,311 - -0.6 2,822,311 - +0.0
Or see this region's nucleotide sequence