Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2572 and Dsui_2573 are separated by 133 nucleotides Dsui_2573 and Dsui_2574 are separated by 68 nucleotides
Dsui_2572: Dsui_2572 - conjugative coupling factor TraD, TOL family, at 2,721,455 to 2,723,548
_2572
Dsui_2573: Dsui_2573 - hypothetical protein, at 2,723,682 to 2,723,906
_2573
Dsui_2574: Dsui_2574 - integral membrane protein (PIN domain superfamily), at 2,723,975 to 2,725,099
_2574
Position (kb)
2723
2724 Strain fitness (log2 ratio)
-2
-1
0
1 at 2722.712 kb on + strand at 2722.769 kb on + strand, within Dsui_2572 at 2722.890 kb on + strand, within Dsui_2572 at 2722.905 kb on - strand, within Dsui_2572 at 2722.987 kb on + strand, within Dsui_2572 at 2722.987 kb on + strand, within Dsui_2572 at 2722.995 kb on - strand, within Dsui_2572 at 2723.001 kb on - strand, within Dsui_2572 at 2723.002 kb on - strand, within Dsui_2572 at 2723.012 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.145 kb on + strand, within Dsui_2572 at 2723.153 kb on - strand, within Dsui_2572 at 2723.204 kb on + strand, within Dsui_2572 at 2723.231 kb on - strand, within Dsui_2572 at 2723.251 kb on + strand, within Dsui_2572 at 2723.295 kb on - strand, within Dsui_2572 at 2723.325 kb on - strand, within Dsui_2572 at 2723.325 kb on - strand, within Dsui_2572 at 2723.335 kb on - strand, within Dsui_2572 at 2723.382 kb on - strand at 2723.403 kb on - strand at 2723.413 kb on - strand at 2723.413 kb on - strand at 2723.515 kb on - strand at 2723.546 kb on - strand at 2723.690 kb on + strand at 2723.731 kb on - strand, within Dsui_2573 at 2723.773 kb on - strand, within Dsui_2573 at 2723.864 kb on + strand, within Dsui_2573 at 2723.872 kb on - strand, within Dsui_2573 at 2723.888 kb on + strand at 2723.903 kb on + strand at 2723.919 kb on - strand at 2723.921 kb on - strand at 2723.986 kb on - strand at 2724.005 kb on - strand at 2724.010 kb on - strand at 2724.018 kb on - strand at 2724.027 kb on + strand at 2724.033 kb on - strand at 2724.033 kb on - strand at 2724.040 kb on - strand at 2724.070 kb on + strand at 2724.097 kb on - strand, within Dsui_2574 at 2724.149 kb on + strand, within Dsui_2574 at 2724.149 kb on + strand, within Dsui_2574 at 2724.213 kb on + strand, within Dsui_2574 at 2724.277 kb on + strand, within Dsui_2574 at 2724.308 kb on + strand, within Dsui_2574 at 2724.342 kb on - strand, within Dsui_2574 at 2724.353 kb on + strand, within Dsui_2574 at 2724.476 kb on - strand, within Dsui_2574 at 2724.491 kb on - strand, within Dsui_2574 at 2724.520 kb on - strand, within Dsui_2574 at 2724.534 kb on - strand, within Dsui_2574 at 2724.573 kb on + strand, within Dsui_2574 at 2724.585 kb on + strand, within Dsui_2574 at 2724.593 kb on - strand, within Dsui_2574 at 2724.611 kb on - strand, within Dsui_2574 at 2724.613 kb on + strand, within Dsui_2574 at 2724.702 kb on + strand, within Dsui_2574 at 2724.708 kb on + strand, within Dsui_2574 at 2724.758 kb on - strand, within Dsui_2574 at 2724.787 kb on + strand, within Dsui_2574 at 2724.809 kb on + strand, within Dsui_2574 at 2724.817 kb on - strand, within Dsui_2574 at 2724.817 kb on - strand, within Dsui_2574 at 2724.827 kb on - strand, within Dsui_2574 at 2724.854 kb on + strand, within Dsui_2574 at 2724.862 kb on + strand, within Dsui_2574
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,722,712 + +0.7 2,722,769 + Dsui_2572 0.63 +0.7 2,722,890 + Dsui_2572 0.69 -0.3 2,722,905 - Dsui_2572 0.69 +0.7 2,722,987 + Dsui_2572 0.73 -1.6 2,722,987 + Dsui_2572 0.73 -1.6 2,722,995 - Dsui_2572 0.74 +0.7 2,723,001 - Dsui_2572 0.74 +0.7 2,723,002 - Dsui_2572 0.74 -0.9 2,723,012 + Dsui_2572 0.74 -0.3 2,723,017 + Dsui_2572 0.75 -0.9 2,723,017 + Dsui_2572 0.75 +0.7 2,723,017 + Dsui_2572 0.75 +0.7 2,723,025 - Dsui_2572 0.75 -1.6 2,723,025 - Dsui_2572 0.75 +0.7 2,723,025 - Dsui_2572 0.75 -0.3 2,723,025 - Dsui_2572 0.75 +0.7 2,723,145 + Dsui_2572 0.81 +0.7 2,723,153 - Dsui_2572 0.81 +0.7 2,723,204 + Dsui_2572 0.84 +0.7 2,723,231 - Dsui_2572 0.85 -1.6 2,723,251 + Dsui_2572 0.86 +0.7 2,723,295 - Dsui_2572 0.88 +0.7 2,723,325 - Dsui_2572 0.89 +0.7 2,723,325 - Dsui_2572 0.89 -1.3 2,723,335 - Dsui_2572 0.90 -0.9 2,723,382 - -1.3 2,723,403 - +0.7 2,723,413 - +0.7 2,723,413 - -0.3 2,723,515 - +0.7 2,723,546 - +0.7 2,723,690 + +0.3 2,723,731 - Dsui_2573 0.22 -0.3 2,723,773 - Dsui_2573 0.40 +0.7 2,723,864 + Dsui_2573 0.81 +0.9 2,723,872 - Dsui_2573 0.84 +0.7 2,723,888 + -0.1 2,723,903 + +0.2 2,723,919 - -0.3 2,723,921 - -0.9 2,723,986 - -2.5 2,724,005 - +0.7 2,724,010 - +0.7 2,724,018 - -0.3 2,724,027 + -0.3 2,724,033 - -1.3 2,724,033 - +0.7 2,724,040 - +0.7 2,724,070 + -0.3 2,724,097 - Dsui_2574 0.11 -1.9 2,724,149 + Dsui_2574 0.15 +0.7 2,724,149 + Dsui_2574 0.15 +0.7 2,724,213 + Dsui_2574 0.21 +0.7 2,724,277 + Dsui_2574 0.27 -0.9 2,724,308 + Dsui_2574 0.30 +0.7 2,724,342 - Dsui_2574 0.33 +0.7 2,724,353 + Dsui_2574 0.34 +0.7 2,724,476 - Dsui_2574 0.45 -0.3 2,724,491 - Dsui_2574 0.46 -1.3 2,724,520 - Dsui_2574 0.48 -0.3 2,724,534 - Dsui_2574 0.50 -1.3 2,724,573 + Dsui_2574 0.53 +0.7 2,724,585 + Dsui_2574 0.54 +0.7 2,724,593 - Dsui_2574 0.55 +0.7 2,724,611 - Dsui_2574 0.57 +0.7 2,724,613 + Dsui_2574 0.57 -0.3 2,724,702 + Dsui_2574 0.65 +0.7 2,724,708 + Dsui_2574 0.65 -1.9 2,724,758 - Dsui_2574 0.70 -0.3 2,724,787 + Dsui_2574 0.72 -1.3 2,724,809 + Dsui_2574 0.74 +0.7 2,724,817 - Dsui_2574 0.75 +0.7 2,724,817 - Dsui_2574 0.75 -0.3 2,724,827 - Dsui_2574 0.76 -0.3 2,724,854 + Dsui_2574 0.78 -0.3 2,724,862 + Dsui_2574 0.79 +0.7
Or see this region's nucleotide sequence