Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2527 and Dsui_2528 overlap by 4 nucleotides Dsui_2528 and Dsui_2529 are separated by 67 nucleotides Dsui_2529 and Dsui_2530 are separated by 55 nucleotides
Dsui_2527: Dsui_2527 - transposase, TnpA family, at 2,676,142 to 2,679,174
_2527
Dsui_2528: Dsui_2528 - putative signal transduction protein, at 2,679,171 to 2,681,186
_2528
Dsui_2529: Dsui_2529 - outer membrane assembly lipoprotein YfiO, at 2,681,254 to 2,682,051
_2529
Dsui_2530: Dsui_2530 - pseudouridine synthase, RluA family, at 2,682,107 to 2,683,234
_2530
Position (kb)
2679
2680
2681
2682 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2678.231 kb on + strand, within Dsui_2527 at 2678.388 kb on + strand, within Dsui_2527 at 2678.390 kb on - strand, within Dsui_2527 at 2678.633 kb on + strand, within Dsui_2527 at 2678.697 kb on + strand, within Dsui_2527 at 2678.721 kb on + strand, within Dsui_2527 at 2678.729 kb on - strand, within Dsui_2527 at 2678.826 kb on + strand, within Dsui_2527 at 2678.951 kb on + strand at 2679.373 kb on + strand, within Dsui_2528 at 2679.419 kb on - strand, within Dsui_2528 at 2679.419 kb on - strand, within Dsui_2528 at 2679.484 kb on + strand, within Dsui_2528 at 2679.492 kb on - strand at 2679.492 kb on - strand, within Dsui_2528 at 2679.520 kb on - strand, within Dsui_2528 at 2679.520 kb on - strand at 2679.520 kb on - strand, within Dsui_2528 at 2679.637 kb on + strand, within Dsui_2528 at 2679.752 kb on + strand, within Dsui_2528 at 2679.760 kb on - strand, within Dsui_2528 at 2679.780 kb on - strand, within Dsui_2528 at 2679.825 kb on - strand, within Dsui_2528 at 2679.885 kb on - strand, within Dsui_2528 at 2679.953 kb on + strand, within Dsui_2528 at 2679.953 kb on + strand, within Dsui_2528 at 2680.030 kb on + strand, within Dsui_2528 at 2680.046 kb on + strand, within Dsui_2528 at 2680.139 kb on - strand at 2680.419 kb on - strand, within Dsui_2528 at 2680.444 kb on - strand, within Dsui_2528 at 2680.447 kb on - strand, within Dsui_2528 at 2680.474 kb on - strand, within Dsui_2528 at 2680.498 kb on + strand, within Dsui_2528 at 2680.532 kb on + strand, within Dsui_2528 at 2680.597 kb on - strand, within Dsui_2528 at 2680.636 kb on + strand, within Dsui_2528 at 2680.685 kb on - strand, within Dsui_2528 at 2680.717 kb on + strand, within Dsui_2528 at 2680.783 kb on - strand, within Dsui_2528 at 2680.806 kb on - strand, within Dsui_2528 at 2680.899 kb on - strand, within Dsui_2528 at 2680.941 kb on + strand, within Dsui_2528 at 2680.941 kb on + strand, within Dsui_2528 at 2681.021 kb on - strand at 2681.095 kb on + strand at 2681.135 kb on + strand at 2681.152 kb on + strand at 2681.189 kb on - strand at 2681.239 kb on + strand at 2681.279 kb on + strand at 2681.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,678,231 + Dsui_2527 0.69 -0.3 2,678,388 + Dsui_2527 0.74 -0.3 2,678,390 - Dsui_2527 0.74 -0.8 2,678,633 + Dsui_2527 0.82 -0.8 2,678,697 + Dsui_2527 0.84 +0.4 2,678,721 + Dsui_2527 0.85 -0.1 2,678,729 - Dsui_2527 0.85 -0.8 2,678,826 + Dsui_2527 0.88 -1.5 2,678,951 + +0.7 2,679,373 + Dsui_2528 0.10 +0.7 2,679,419 - Dsui_2528 0.12 +0.7 2,679,419 - Dsui_2528 0.12 -0.3 2,679,484 + Dsui_2528 0.16 -1.6 2,679,492 - -0.3 2,679,492 - Dsui_2528 0.16 +0.7 2,679,520 - Dsui_2528 0.17 -1.9 2,679,520 - -0.9 2,679,520 - Dsui_2528 0.17 -1.3 2,679,637 + Dsui_2528 0.23 -0.3 2,679,752 + Dsui_2528 0.29 -0.9 2,679,760 - Dsui_2528 0.29 -0.3 2,679,780 - Dsui_2528 0.30 +0.7 2,679,825 - Dsui_2528 0.32 +0.7 2,679,885 - Dsui_2528 0.35 -1.6 2,679,953 + Dsui_2528 0.39 +0.7 2,679,953 + Dsui_2528 0.39 -0.3 2,680,030 + Dsui_2528 0.43 +0.7 2,680,046 + Dsui_2528 0.43 +0.7 2,680,139 - +0.7 2,680,419 - Dsui_2528 0.62 -0.3 2,680,444 - Dsui_2528 0.63 -0.9 2,680,447 - Dsui_2528 0.63 +0.7 2,680,474 - Dsui_2528 0.65 +0.7 2,680,498 + Dsui_2528 0.66 +0.7 2,680,532 + Dsui_2528 0.68 -1.3 2,680,597 - Dsui_2528 0.71 +0.7 2,680,636 + Dsui_2528 0.73 -0.9 2,680,685 - Dsui_2528 0.75 -1.3 2,680,717 + Dsui_2528 0.77 +0.7 2,680,783 - Dsui_2528 0.80 -0.3 2,680,806 - Dsui_2528 0.81 -0.3 2,680,899 - Dsui_2528 0.86 +0.7 2,680,941 + Dsui_2528 0.88 +0.7 2,680,941 + Dsui_2528 0.88 -1.6 2,681,021 - -0.9 2,681,095 + -0.3 2,681,135 + -1.3 2,681,152 + +0.7 2,681,189 - +3.1 2,681,239 + +0.7 2,681,279 + +0.7 2,681,284 + -0.3
Or see this region's nucleotide sequence