Strain Fitness in Dechlorosoma suillum PS around Dsui_2528

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2527 and Dsui_2528 overlap by 4 nucleotidesDsui_2528 and Dsui_2529 are separated by 67 nucleotidesDsui_2529 and Dsui_2530 are separated by 55 nucleotides Dsui_2527: Dsui_2527 - transposase, TnpA family, at 2,676,142 to 2,679,174 _2527 Dsui_2528: Dsui_2528 - putative signal transduction protein, at 2,679,171 to 2,681,186 _2528 Dsui_2529: Dsui_2529 - outer membrane assembly lipoprotein YfiO, at 2,681,254 to 2,682,051 _2529 Dsui_2530: Dsui_2530 - pseudouridine synthase, RluA family, at 2,682,107 to 2,683,234 _2530 Position (kb) 2679 2680 2681 2682Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2678.231 kb on + strand, within Dsui_2527at 2678.388 kb on + strand, within Dsui_2527at 2678.390 kb on - strand, within Dsui_2527at 2678.633 kb on + strand, within Dsui_2527at 2678.697 kb on + strand, within Dsui_2527at 2678.721 kb on + strand, within Dsui_2527at 2678.729 kb on - strand, within Dsui_2527at 2678.826 kb on + strand, within Dsui_2527at 2678.951 kb on + strandat 2679.373 kb on + strand, within Dsui_2528at 2679.419 kb on - strand, within Dsui_2528at 2679.419 kb on - strand, within Dsui_2528at 2679.484 kb on + strand, within Dsui_2528at 2679.492 kb on - strandat 2679.492 kb on - strand, within Dsui_2528at 2679.520 kb on - strand, within Dsui_2528at 2679.520 kb on - strandat 2679.520 kb on - strand, within Dsui_2528at 2679.637 kb on + strand, within Dsui_2528at 2679.752 kb on + strand, within Dsui_2528at 2679.760 kb on - strand, within Dsui_2528at 2679.780 kb on - strand, within Dsui_2528at 2679.825 kb on - strand, within Dsui_2528at 2679.885 kb on - strand, within Dsui_2528at 2679.953 kb on + strand, within Dsui_2528at 2679.953 kb on + strand, within Dsui_2528at 2680.030 kb on + strand, within Dsui_2528at 2680.046 kb on + strand, within Dsui_2528at 2680.139 kb on - strandat 2680.419 kb on - strand, within Dsui_2528at 2680.444 kb on - strand, within Dsui_2528at 2680.447 kb on - strand, within Dsui_2528at 2680.474 kb on - strand, within Dsui_2528at 2680.498 kb on + strand, within Dsui_2528at 2680.532 kb on + strand, within Dsui_2528at 2680.597 kb on - strand, within Dsui_2528at 2680.636 kb on + strand, within Dsui_2528at 2680.685 kb on - strand, within Dsui_2528at 2680.717 kb on + strand, within Dsui_2528at 2680.783 kb on - strand, within Dsui_2528at 2680.806 kb on - strand, within Dsui_2528at 2680.899 kb on - strand, within Dsui_2528at 2680.941 kb on + strand, within Dsui_2528at 2680.941 kb on + strand, within Dsui_2528at 2681.021 kb on - strandat 2681.095 kb on + strandat 2681.135 kb on + strandat 2681.152 kb on + strandat 2681.189 kb on - strandat 2681.239 kb on + strandat 2681.279 kb on + strandat 2681.284 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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2,678,231 + Dsui_2527 0.69 -0.3
2,678,388 + Dsui_2527 0.74 -0.3
2,678,390 - Dsui_2527 0.74 -0.8
2,678,633 + Dsui_2527 0.82 -0.8
2,678,697 + Dsui_2527 0.84 +0.4
2,678,721 + Dsui_2527 0.85 -0.1
2,678,729 - Dsui_2527 0.85 -0.8
2,678,826 + Dsui_2527 0.88 -1.5
2,678,951 + +0.7
2,679,373 + Dsui_2528 0.10 +0.7
2,679,419 - Dsui_2528 0.12 +0.7
2,679,419 - Dsui_2528 0.12 -0.3
2,679,484 + Dsui_2528 0.16 -1.6
2,679,492 - -0.3
2,679,492 - Dsui_2528 0.16 +0.7
2,679,520 - Dsui_2528 0.17 -1.9
2,679,520 - -0.9
2,679,520 - Dsui_2528 0.17 -1.3
2,679,637 + Dsui_2528 0.23 -0.3
2,679,752 + Dsui_2528 0.29 -0.9
2,679,760 - Dsui_2528 0.29 -0.3
2,679,780 - Dsui_2528 0.30 +0.7
2,679,825 - Dsui_2528 0.32 +0.7
2,679,885 - Dsui_2528 0.35 -1.6
2,679,953 + Dsui_2528 0.39 +0.7
2,679,953 + Dsui_2528 0.39 -0.3
2,680,030 + Dsui_2528 0.43 +0.7
2,680,046 + Dsui_2528 0.43 +0.7
2,680,139 - +0.7
2,680,419 - Dsui_2528 0.62 -0.3
2,680,444 - Dsui_2528 0.63 -0.9
2,680,447 - Dsui_2528 0.63 +0.7
2,680,474 - Dsui_2528 0.65 +0.7
2,680,498 + Dsui_2528 0.66 +0.7
2,680,532 + Dsui_2528 0.68 -1.3
2,680,597 - Dsui_2528 0.71 +0.7
2,680,636 + Dsui_2528 0.73 -0.9
2,680,685 - Dsui_2528 0.75 -1.3
2,680,717 + Dsui_2528 0.77 +0.7
2,680,783 - Dsui_2528 0.80 -0.3
2,680,806 - Dsui_2528 0.81 -0.3
2,680,899 - Dsui_2528 0.86 +0.7
2,680,941 + Dsui_2528 0.88 +0.7
2,680,941 + Dsui_2528 0.88 -1.6
2,681,021 - -0.9
2,681,095 + -0.3
2,681,135 + -1.3
2,681,152 + +0.7
2,681,189 - +3.1
2,681,239 + +0.7
2,681,279 + +0.7
2,681,284 + -0.3

Or see this region's nucleotide sequence