Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2398 and Dsui_2399 are separated by 62 nucleotides Dsui_2399 and Dsui_2400 are separated by 4 nucleotides Dsui_2400 and Dsui_2401 are separated by 13 nucleotides
Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801
_2398
Dsui_2399: Dsui_2399 - membrane-associated phospholipid phosphatase, at 2,551,864 to 2,552,514
_2399
Dsui_2400: Dsui_2400 - signal transduction histidine kinase, at 2,552,519 to 2,553,847
_2400
Dsui_2401: Dsui_2401 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,553,861 to 2,554,595
_2401
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2551.544 kb on + strand at 2551.634 kb on + strand, within Dsui_2398 at 2551.704 kb on + strand at 2551.941 kb on - strand at 2552.101 kb on - strand, within Dsui_2399 at 2552.124 kb on - strand at 2552.160 kb on - strand at 2552.170 kb on - strand at 2552.174 kb on + strand at 2552.316 kb on - strand, within Dsui_2399 at 2552.629 kb on + strand at 2552.632 kb on - strand at 2552.714 kb on - strand, within Dsui_2400 at 2553.100 kb on - strand, within Dsui_2400 at 2553.186 kb on + strand at 2553.220 kb on - strand, within Dsui_2400 at 2553.322 kb on + strand, within Dsui_2400 at 2553.330 kb on - strand, within Dsui_2400 at 2553.373 kb on - strand, within Dsui_2400 at 2553.380 kb on - strand, within Dsui_2400 at 2553.485 kb on + strand at 2553.528 kb on + strand at 2553.586 kb on + strand at 2553.587 kb on - strand, within Dsui_2400 at 2553.650 kb on + strand at 2553.715 kb on - strand at 2553.737 kb on - strand at 2554.000 kb on - strand, within Dsui_2401 at 2554.029 kb on + strand at 2554.075 kb on + strand at 2554.162 kb on - strand, within Dsui_2401 at 2554.259 kb on - strand, within Dsui_2401 at 2554.284 kb on - strand, within Dsui_2401 at 2554.485 kb on - strand, within Dsui_2401 at 2554.680 kb on + strand at 2554.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,551,544 + +0.7 2,551,634 + Dsui_2398 0.83 -2.3 2,551,704 + -1.6 2,551,941 - +0.7 2,552,101 - Dsui_2399 0.36 -0.8 2,552,124 - -0.3 2,552,160 - +0.7 2,552,170 - +0.7 2,552,174 + -0.3 2,552,316 - Dsui_2399 0.69 +0.7 2,552,629 + +0.7 2,552,632 - +0.2 2,552,714 - Dsui_2400 0.15 -0.8 2,553,100 - Dsui_2400 0.44 -1.8 2,553,186 + +0.7 2,553,220 - Dsui_2400 0.53 -1.8 2,553,322 + Dsui_2400 0.60 -1.8 2,553,330 - Dsui_2400 0.61 -0.6 2,553,373 - Dsui_2400 0.64 -0.3 2,553,380 - Dsui_2400 0.65 +3.6 2,553,485 + -1.6 2,553,528 + +0.7 2,553,586 + +0.7 2,553,587 - Dsui_2400 0.80 -0.6 2,553,650 + -0.3 2,553,715 - +1.4 2,553,737 - +1.0 2,554,000 - Dsui_2401 0.19 -0.1 2,554,029 + -0.3 2,554,075 + -0.3 2,554,162 - Dsui_2401 0.41 +0.3 2,554,259 - Dsui_2401 0.54 -1.8 2,554,284 - Dsui_2401 0.58 -0.8 2,554,485 - Dsui_2401 0.85 -1.6 2,554,680 + -1.8 2,554,719 - +0.7
Or see this region's nucleotide sequence