Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2302 and Dsui_2303 are separated by 39 nucleotides Dsui_2303 and Dsui_2304 are separated by 29 nucleotides Dsui_2304 and Dsui_2305 overlap by 1 nucleotides
Dsui_2302: Dsui_2302 - acyl-CoA dehydrogenase, at 2,458,532 to 2,460,325
_2302
Dsui_2303: Dsui_2303 - putative membrane protein, at 2,460,365 to 2,461,030
_2303
Dsui_2304: Dsui_2304 - electron transfer flavoprotein, alpha subunit, at 2,461,060 to 2,461,989
_2304
Dsui_2305: Dsui_2305 - electron transfer flavoprotein, beta subunit, at 2,461,989 to 2,462,738
_2305
Position (kb)
2460
2461
2462 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2459.383 kb on + strand, within Dsui_2302 at 2459.412 kb on - strand, within Dsui_2302 at 2459.654 kb on - strand, within Dsui_2302 at 2459.712 kb on + strand, within Dsui_2302 at 2459.769 kb on + strand, within Dsui_2302 at 2459.775 kb on + strand, within Dsui_2302 at 2459.844 kb on + strand, within Dsui_2302 at 2459.844 kb on - strand, within Dsui_2302 at 2459.857 kb on - strand, within Dsui_2302 at 2459.947 kb on + strand, within Dsui_2302 at 2459.964 kb on + strand, within Dsui_2302 at 2460.020 kb on - strand, within Dsui_2302 at 2460.039 kb on + strand, within Dsui_2302 at 2460.052 kb on - strand, within Dsui_2302 at 2460.127 kb on + strand, within Dsui_2302 at 2460.184 kb on + strand at 2460.193 kb on - strand at 2460.193 kb on - strand at 2460.232 kb on - strand at 2460.259 kb on + strand at 2460.267 kb on - strand at 2460.267 kb on - strand at 2460.322 kb on - strand at 2460.342 kb on + strand at 2460.407 kb on - strand at 2460.424 kb on + strand at 2460.636 kb on - strand, within Dsui_2303 at 2460.687 kb on + strand, within Dsui_2303 at 2460.687 kb on + strand, within Dsui_2303 at 2460.776 kb on + strand, within Dsui_2303 at 2460.781 kb on + strand, within Dsui_2303 at 2460.908 kb on - strand, within Dsui_2303 at 2460.992 kb on + strand at 2461.000 kb on - strand at 2461.000 kb on - strand at 2461.005 kb on - strand at 2461.057 kb on + strand at 2461.177 kb on - strand, within Dsui_2304 at 2461.384 kb on + strand, within Dsui_2304 at 2461.454 kb on - strand, within Dsui_2304 at 2461.503 kb on - strand, within Dsui_2304 at 2461.561 kb on - strand, within Dsui_2304 at 2461.588 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,459,383 + Dsui_2302 0.47 -0.2 2,459,412 - Dsui_2302 0.49 -0.3 2,459,654 - Dsui_2302 0.63 +1.3 2,459,712 + Dsui_2302 0.66 -0.8 2,459,769 + Dsui_2302 0.69 +0.8 2,459,775 + Dsui_2302 0.69 -0.8 2,459,844 + Dsui_2302 0.73 +0.8 2,459,844 - Dsui_2302 0.73 -1.9 2,459,857 - Dsui_2302 0.74 -0.8 2,459,947 + Dsui_2302 0.79 -0.2 2,459,964 + Dsui_2302 0.80 -0.8 2,460,020 - Dsui_2302 0.83 -1.1 2,460,039 + Dsui_2302 0.84 -0.2 2,460,052 - Dsui_2302 0.85 -0.8 2,460,127 + Dsui_2302 0.89 -1.2 2,460,184 + -0.8 2,460,193 - -0.6 2,460,193 - +1.4 2,460,232 - -0.0 2,460,259 + +0.8 2,460,267 - -0.9 2,460,267 - +0.2 2,460,322 - -0.1 2,460,342 + +1.8 2,460,407 - +0.2 2,460,424 + +0.8 2,460,636 - Dsui_2303 0.41 -0.6 2,460,687 + Dsui_2303 0.48 +0.8 2,460,687 + Dsui_2303 0.48 -0.2 2,460,776 + Dsui_2303 0.62 -0.2 2,460,781 + Dsui_2303 0.62 -0.8 2,460,908 - Dsui_2303 0.82 -0.6 2,460,992 + -1.8 2,461,000 - +0.8 2,461,000 - -0.0 2,461,005 - -0.8 2,461,057 + +0.8 2,461,177 - Dsui_2304 0.13 +1.5 2,461,384 + Dsui_2304 0.35 +0.8 2,461,454 - Dsui_2304 0.42 +1.0 2,461,503 - Dsui_2304 0.48 +2.1 2,461,561 - Dsui_2304 0.54 +2.4 2,461,588 + -1.2
Or see this region's nucleotide sequence