Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2291 and Dsui_2292 are separated by 37 nucleotides Dsui_2292 and Dsui_2293 are separated by 156 nucleotides Dsui_2293 and Dsui_2294 are separated by 51 nucleotides Dsui_2294 and Dsui_2295 are separated by 169 nucleotides
Dsui_2291: Dsui_2291 - putative paraquat-inducible protein A, at 2,445,630 to 2,446,265
_2291
Dsui_2292: Dsui_2292 - RRM domain-containing RNA-binding protein, at 2,446,303 to 2,446,542
_2292
Dsui_2293: Dsui_2293 - poly(3-hydroxyalkanoate) synthetase, at 2,446,699 to 2,448,483
_2293
Dsui_2294: Dsui_2294 - phasin family protein, at 2,448,535 to 2,449,032
_2294
Dsui_2295: Dsui_2295 - transcriptional regulator, at 2,449,202 to 2,449,843
_2295
Position (kb)
2446
2447
2448
2449 Strain fitness (log2 ratio)
-2
-1
0
1 at 2445.829 kb on - strand, within Dsui_2291 at 2445.923 kb on - strand, within Dsui_2291 at 2445.975 kb on + strand at 2446.076 kb on + strand at 2446.077 kb on - strand at 2446.094 kb on + strand, within Dsui_2291 at 2446.158 kb on - strand, within Dsui_2291 at 2446.158 kb on - strand, within Dsui_2291 at 2446.158 kb on - strand at 2446.296 kb on - strand at 2446.518 kb on + strand at 2446.584 kb on - strand at 2446.739 kb on + strand at 2446.870 kb on + strand at 2446.879 kb on - strand at 2446.971 kb on - strand at 2447.024 kb on + strand, within Dsui_2293 at 2447.025 kb on - strand at 2447.182 kb on + strand at 2447.276 kb on - strand, within Dsui_2293 at 2447.294 kb on - strand, within Dsui_2293 at 2447.432 kb on - strand, within Dsui_2293 at 2447.508 kb on - strand, within Dsui_2293 at 2447.661 kb on + strand at 2447.704 kb on - strand, within Dsui_2293 at 2447.708 kb on - strand, within Dsui_2293 at 2447.747 kb on + strand at 2447.773 kb on + strand at 2447.977 kb on - strand, within Dsui_2293 at 2448.102 kb on + strand at 2448.139 kb on - strand, within Dsui_2293 at 2448.331 kb on - strand at 2448.367 kb on + strand at 2448.384 kb on - strand at 2448.478 kb on + strand at 2448.487 kb on - strand at 2448.603 kb on - strand, within Dsui_2294 at 2448.797 kb on + strand, within Dsui_2294 at 2448.803 kb on - strand, within Dsui_2294 at 2448.804 kb on - strand, within Dsui_2294 at 2448.805 kb on - strand, within Dsui_2294 at 2448.805 kb on - strand, within Dsui_2294 at 2448.968 kb on - strand, within Dsui_2294 at 2449.042 kb on - strand at 2449.162 kb on + strand at 2449.263 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,445,829 - Dsui_2291 0.31 +0.8 2,445,923 - Dsui_2291 0.46 -0.2 2,445,975 + +0.8 2,446,076 + -0.2 2,446,077 - +0.8 2,446,094 + Dsui_2291 0.73 -1.5 2,446,158 - Dsui_2291 0.83 -0.2 2,446,158 - Dsui_2291 0.83 -0.2 2,446,158 - -0.2 2,446,296 - -0.2 2,446,518 + -0.2 2,446,584 - -0.2 2,446,739 + -0.2 2,446,870 + -0.2 2,446,879 - +0.8 2,446,971 - +0.8 2,447,024 + Dsui_2293 0.18 -0.8 2,447,025 - +0.8 2,447,182 + +0.8 2,447,276 - Dsui_2293 0.32 +0.8 2,447,294 - Dsui_2293 0.33 -0.2 2,447,432 - Dsui_2293 0.41 +0.8 2,447,508 - Dsui_2293 0.45 -0.2 2,447,661 + -0.2 2,447,704 - Dsui_2293 0.56 -1.2 2,447,708 - Dsui_2293 0.57 -0.2 2,447,747 + +0.8 2,447,773 + +0.8 2,447,977 - Dsui_2293 0.72 -0.8 2,448,102 + +0.8 2,448,139 - Dsui_2293 0.81 -2.0 2,448,331 - +0.8 2,448,367 + -1.2 2,448,384 - -0.2 2,448,478 + +0.8 2,448,487 - +0.8 2,448,603 - Dsui_2294 0.14 -1.2 2,448,797 + Dsui_2294 0.53 -1.5 2,448,803 - Dsui_2294 0.54 -0.2 2,448,804 - Dsui_2294 0.54 +1.1 2,448,805 - Dsui_2294 0.54 -0.2 2,448,805 - Dsui_2294 0.54 +0.8 2,448,968 - Dsui_2294 0.87 -1.2 2,449,042 - -1.8 2,449,162 + -0.2 2,449,263 + +0.8
Or see this region's nucleotide sequence