Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2245 and Dsui_2246 are separated by 11 nucleotides Dsui_2246 and Dsui_2247 are separated by 9 nucleotides Dsui_2247 and Dsui_2248 are separated by 40 nucleotides Dsui_2248 and Dsui_2249 overlap by 4 nucleotides
Dsui_2245: Dsui_2245 - protein of unknown function (DUF1924), at 2,393,595 to 2,394,017
_2245
Dsui_2246: Dsui_2246 - Diheme cytochrome c, at 2,394,029 to 2,394,508
_2246
Dsui_2247: Dsui_2247 - cytochrome b, at 2,394,518 to 2,395,177
_2247
Dsui_2248: Dsui_2248 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,395,218 to 2,395,895
_2248
Dsui_2249: Dsui_2249 - signal transduction histidine kinase, at 2,395,892 to 2,397,259
_2249
Position (kb)
2394
2395
2396 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2393.519 kb on + strand at 2393.685 kb on + strand at 2393.775 kb on + strand at 2393.783 kb on - strand at 2393.783 kb on - strand at 2394.067 kb on - strand at 2394.180 kb on + strand at 2394.188 kb on - strand at 2394.200 kb on - strand at 2394.277 kb on - strand at 2394.312 kb on + strand, within Dsui_2246 at 2394.438 kb on - strand at 2394.628 kb on - strand at 2394.993 kb on - strand, within Dsui_2247 at 2395.084 kb on - strand at 2395.194 kb on + strand at 2395.530 kb on - strand at 2395.698 kb on + strand, within Dsui_2248 at 2395.724 kb on + strand, within Dsui_2248 at 2395.755 kb on + strand, within Dsui_2248 at 2395.755 kb on + strand, within Dsui_2248 at 2395.783 kb on + strand at 2395.902 kb on + strand at 2395.902 kb on + strand at 2395.925 kb on + strand at 2395.954 kb on + strand at 2396.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,393,519 + -0.1 2,393,685 + -0.1 2,393,775 + +0.9 2,393,783 - +0.9 2,393,783 - +0.9 2,394,067 - +0.8 2,394,180 + -0.2 2,394,188 - +0.8 2,394,200 - -0.7 2,394,277 - +0.8 2,394,312 + Dsui_2246 0.59 -0.2 2,394,438 - -1.2 2,394,628 - -0.7 2,394,993 - Dsui_2247 0.72 -1.5 2,395,084 - +0.8 2,395,194 + +0.8 2,395,530 - -0.2 2,395,698 + Dsui_2248 0.71 +0.8 2,395,724 + Dsui_2248 0.75 -1.5 2,395,755 + Dsui_2248 0.79 -0.7 2,395,755 + Dsui_2248 0.79 +0.8 2,395,783 + -0.7 2,395,902 + -0.7 2,395,902 + -0.5 2,395,925 + -3.9 2,395,954 + +0.7 2,396,022 - -0.2
Or see this region's nucleotide sequence