Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2241 and Dsui_2242 are separated by 250 nucleotides Dsui_2242 and Dsui_2243 overlap by 31 nucleotides Dsui_2243 and Dsui_2244 are separated by 6 nucleotides
Dsui_2241: Dsui_2241 - OAH/OAS sulfhydrylase, at 2,388,527 to 2,389,801
_2241
Dsui_2242: Dsui_2242 - hypothetical protein, at 2,390,052 to 2,390,546
_2242
Dsui_2243: Dsui_2243 - hypothetical protein, at 2,390,516 to 2,390,797
_2243
Dsui_2244: Dsui_2244 - DNA mismatch repair protein MutS, at 2,390,804 to 2,393,407
_2244
Position (kb)
2390
2391 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2389.531 kb on - strand, within Dsui_2241 at 2389.536 kb on - strand, within Dsui_2241 at 2389.541 kb on - strand, within Dsui_2241 at 2389.560 kb on + strand at 2389.680 kb on + strand at 2389.683 kb on - strand at 2389.683 kb on - strand at 2389.783 kb on + strand at 2389.953 kb on + strand at 2389.963 kb on + strand at 2389.974 kb on - strand at 2390.037 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.067 kb on - strand at 2390.067 kb on - strand at 2390.193 kb on + strand, within Dsui_2242 at 2390.232 kb on + strand, within Dsui_2242 at 2390.256 kb on + strand, within Dsui_2242 at 2390.386 kb on - strand, within Dsui_2242 at 2390.560 kb on + strand, within Dsui_2243 at 2390.670 kb on - strand, within Dsui_2243 at 2390.732 kb on + strand, within Dsui_2243 at 2390.779 kb on + strand at 2390.865 kb on - strand at 2390.899 kb on - strand at 2390.941 kb on - strand at 2390.976 kb on - strand at 2390.983 kb on + strand at 2391.015 kb on + strand at 2391.094 kb on - strand, within Dsui_2244 at 2391.144 kb on + strand, within Dsui_2244 at 2391.149 kb on + strand, within Dsui_2244 at 2391.152 kb on - strand, within Dsui_2244 at 2391.170 kb on + strand at 2391.208 kb on + strand, within Dsui_2244 at 2391.208 kb on + strand at 2391.216 kb on - strand, within Dsui_2244 at 2391.254 kb on + strand, within Dsui_2244 at 2391.262 kb on - strand, within Dsui_2244 at 2391.424 kb on + strand at 2391.606 kb on + strand, within Dsui_2244 at 2391.612 kb on + strand at 2391.685 kb on + strand at 2391.756 kb on + strand, within Dsui_2244
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,389,531 - Dsui_2241 0.79 +1.5 2,389,536 - Dsui_2241 0.79 +0.9 2,389,541 - Dsui_2241 0.80 -0.7 2,389,560 + +0.9 2,389,680 + -0.1 2,389,683 - +0.3 2,389,683 - -1.1 2,389,783 + -0.4 2,389,953 + -1.1 2,389,963 + -0.1 2,389,974 - -2.3 2,390,037 + -0.1 2,390,059 + -0.1 2,390,059 + -0.7 2,390,059 + +1.6 2,390,059 + -0.7 2,390,059 + +0.9 2,390,059 + +0.9 2,390,059 + +0.9 2,390,059 + -2.1 2,390,067 - +0.9 2,390,067 - +0.9 2,390,193 + Dsui_2242 0.28 +0.5 2,390,232 + Dsui_2242 0.36 -1.2 2,390,256 + Dsui_2242 0.41 +1.9 2,390,386 - Dsui_2242 0.67 -0.7 2,390,560 + Dsui_2243 0.16 -0.7 2,390,670 - Dsui_2243 0.55 -0.6 2,390,732 + Dsui_2243 0.77 -0.7 2,390,779 + +3.5 2,390,865 - +0.7 2,390,899 - -1.0 2,390,941 - -0.3 2,390,976 - +0.7 2,390,983 + +0.9 2,391,015 + +0.9 2,391,094 - Dsui_2244 0.11 -0.2 2,391,144 + Dsui_2244 0.13 +0.9 2,391,149 + Dsui_2244 0.13 -1.1 2,391,152 - Dsui_2244 0.13 +0.1 2,391,170 + +0.9 2,391,208 + Dsui_2244 0.16 +0.9 2,391,208 + -0.7 2,391,216 - Dsui_2244 0.16 +0.7 2,391,254 + Dsui_2244 0.17 +0.9 2,391,262 - Dsui_2244 0.18 +0.2 2,391,424 + +0.9 2,391,606 + Dsui_2244 0.31 +0.9 2,391,612 + +0.9 2,391,685 + +0.9 2,391,756 + Dsui_2244 0.37 +0.9
Or see this region's nucleotide sequence