Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2235 and Dsui_2236 are separated by 57 nucleotides Dsui_2236 and Dsui_2237 overlap by 4 nucleotides
Dsui_2235: Dsui_2235 - hypothetical protein, at 2,378,236 to 2,379,120
_2235
Dsui_2236: Dsui_2236 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,379,178 to 2,380,164
_2236
Dsui_2237: Dsui_2237 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,380,161 to 2,381,129
_2237
Position (kb)
2379
2380
2381 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2378.239 kb on + strand at 2378.292 kb on + strand at 2378.300 kb on - strand at 2378.353 kb on - strand, within Dsui_2235 at 2378.537 kb on + strand at 2378.571 kb on - strand at 2378.604 kb on + strand at 2378.772 kb on - strand, within Dsui_2235 at 2378.849 kb on - strand, within Dsui_2235 at 2379.081 kb on - strand at 2379.207 kb on - strand at 2379.253 kb on + strand at 2379.253 kb on + strand at 2379.261 kb on - strand at 2379.262 kb on - strand at 2379.264 kb on + strand at 2379.274 kb on - strand at 2379.284 kb on - strand, within Dsui_2236 at 2379.289 kb on - strand, within Dsui_2236 at 2379.343 kb on - strand at 2379.373 kb on + strand at 2379.658 kb on + strand at 2379.821 kb on + strand at 2379.854 kb on - strand at 2379.970 kb on + strand at 2380.082 kb on - strand at 2380.192 kb on + strand at 2380.198 kb on + strand at 2380.206 kb on - strand at 2380.316 kb on + strand, within Dsui_2237 at 2380.334 kb on - strand, within Dsui_2237 at 2380.421 kb on - strand, within Dsui_2237 at 2380.441 kb on - strand, within Dsui_2237 at 2380.479 kb on + strand at 2380.493 kb on - strand, within Dsui_2237 at 2380.520 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.552 kb on - strand at 2380.677 kb on - strand, within Dsui_2237 at 2380.724 kb on + strand at 2380.810 kb on + strand at 2380.835 kb on + strand, within Dsui_2237 at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.854 kb on - strand, within Dsui_2237 at 2380.944 kb on - strand, within Dsui_2237 at 2380.962 kb on + strand at 2381.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,378,239 + +0.9 2,378,292 + +0.9 2,378,300 - -0.1 2,378,353 - Dsui_2235 0.13 +1.9 2,378,537 + +0.9 2,378,571 - +0.9 2,378,604 + -0.7 2,378,772 - Dsui_2235 0.61 +0.9 2,378,849 - Dsui_2235 0.69 +0.2 2,379,081 - -0.7 2,379,207 - -0.1 2,379,253 + -1.1 2,379,253 + -0.7 2,379,261 - -1.9 2,379,262 - +0.9 2,379,264 + +0.9 2,379,274 - -1.1 2,379,284 - Dsui_2236 0.11 +0.9 2,379,289 - Dsui_2236 0.11 -1.1 2,379,343 - -1.1 2,379,373 + +0.9 2,379,658 + -1.4 2,379,821 + -0.7 2,379,854 - +0.9 2,379,970 + +0.9 2,380,082 - -0.7 2,380,192 + -0.1 2,380,198 + -0.1 2,380,206 - +0.9 2,380,316 + Dsui_2237 0.16 -0.7 2,380,334 - Dsui_2237 0.18 +0.9 2,380,421 - Dsui_2237 0.27 -0.1 2,380,441 - Dsui_2237 0.29 +0.1 2,380,479 + -0.1 2,380,493 - Dsui_2237 0.34 +0.9 2,380,520 - Dsui_2237 0.37 -2.3 2,380,542 - Dsui_2237 0.39 -2.9 2,380,542 - Dsui_2237 0.39 -0.7 2,380,542 - Dsui_2237 0.39 -1.1 2,380,552 - +0.9 2,380,677 - Dsui_2237 0.53 -1.7 2,380,724 + +0.9 2,380,810 + +0.9 2,380,835 + Dsui_2237 0.70 -0.7 2,380,835 + +0.9 2,380,835 + +0.9 2,380,835 + +0.9 2,380,854 - Dsui_2237 0.72 +0.9 2,380,944 - Dsui_2237 0.81 -1.7 2,380,962 + +0.9 2,381,156 - -0.1
Or see this region's nucleotide sequence