Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2233 and Dsui_2234 are separated by 260 nucleotides Dsui_2234 and Dsui_2235 are separated by 73 nucleotides
Dsui_2233: Dsui_2233 - catalase/peroxidase HPI, at 2,375,338 to 2,377,518
_2233
Dsui_2234: Dsui_2234 - hypothetical protein, at 2,377,779 to 2,378,162
_2234
Dsui_2235: Dsui_2235 - hypothetical protein, at 2,378,236 to 2,379,120
_2235
Position (kb)
2377
2378
2379 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2376.791 kb on + strand at 2376.808 kb on - strand at 2376.868 kb on - strand, within Dsui_2233 at 2376.921 kb on - strand, within Dsui_2233 at 2377.053 kb on - strand, within Dsui_2233 at 2377.224 kb on - strand, within Dsui_2233 at 2377.239 kb on - strand, within Dsui_2233 at 2377.286 kb on + strand, within Dsui_2233 at 2377.288 kb on + strand at 2377.341 kb on - strand at 2377.358 kb on - strand at 2377.392 kb on + strand at 2377.416 kb on - strand at 2377.484 kb on - strand at 2377.485 kb on - strand at 2377.546 kb on - strand at 2377.559 kb on - strand at 2377.559 kb on - strand at 2377.657 kb on + strand at 2377.676 kb on + strand at 2377.684 kb on - strand at 2377.784 kb on - strand at 2377.911 kb on - strand, within Dsui_2234 at 2377.936 kb on - strand, within Dsui_2234 at 2378.035 kb on + strand, within Dsui_2234 at 2378.072 kb on - strand, within Dsui_2234 at 2378.165 kb on - strand at 2378.239 kb on + strand at 2378.292 kb on + strand at 2378.300 kb on - strand at 2378.353 kb on - strand, within Dsui_2235 at 2378.537 kb on + strand at 2378.571 kb on - strand at 2378.604 kb on + strand at 2378.772 kb on - strand, within Dsui_2235 at 2378.849 kb on - strand, within Dsui_2235 at 2379.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,376,791 + +0.9 2,376,808 - +0.9 2,376,868 - Dsui_2233 0.70 -0.1 2,376,921 - Dsui_2233 0.73 +0.9 2,377,053 - Dsui_2233 0.79 +0.9 2,377,224 - Dsui_2233 0.86 -2.7 2,377,239 - Dsui_2233 0.87 +0.9 2,377,286 + Dsui_2233 0.89 -1.4 2,377,288 + -0.1 2,377,341 - +0.9 2,377,358 - +0.9 2,377,392 + +0.9 2,377,416 - +0.9 2,377,484 - +0.9 2,377,485 - -1.7 2,377,546 - +0.9 2,377,559 - +0.9 2,377,559 - +0.9 2,377,657 + +0.9 2,377,676 + -0.1 2,377,684 - -0.1 2,377,784 - -0.7 2,377,911 - Dsui_2234 0.34 -1.1 2,377,936 - Dsui_2234 0.41 +0.9 2,378,035 + Dsui_2234 0.67 +1.2 2,378,072 - Dsui_2234 0.76 +0.9 2,378,165 - +0.9 2,378,239 + +0.9 2,378,292 + +0.9 2,378,300 - -0.1 2,378,353 - Dsui_2235 0.13 +1.9 2,378,537 + +0.9 2,378,571 - +0.9 2,378,604 + -0.7 2,378,772 - Dsui_2235 0.61 +0.9 2,378,849 - Dsui_2235 0.69 +0.2 2,379,081 - -0.7
Or see this region's nucleotide sequence