Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2207 and Dsui_2208 are separated by 101 nucleotides Dsui_2208 and Dsui_2209 are separated by 69 nucleotides
Dsui_2207: Dsui_2207 - uncharacterized protein involved in response to NO, at 2,345,838 to 2,346,998
_2207
Dsui_2208: Dsui_2208 - citrate lyase beta subunit, at 2,347,100 to 2,348,107
_2208
Dsui_2209: Dsui_2209 - malate dehydrogenase, at 2,348,177 to 2,349,163
_2209
Position (kb)
2347
2348
2349 Strain fitness (log2 ratio)
-2
-1
0
1 at 2346.131 kb on + strand, within Dsui_2207 at 2346.131 kb on + strand, within Dsui_2207 at 2346.131 kb on + strand, within Dsui_2207 at 2346.155 kb on + strand at 2346.155 kb on + strand, within Dsui_2207 at 2346.193 kb on + strand at 2346.193 kb on - strand, within Dsui_2207 at 2346.237 kb on + strand, within Dsui_2207 at 2346.238 kb on - strand, within Dsui_2207 at 2346.254 kb on - strand, within Dsui_2207 at 2346.254 kb on - strand, within Dsui_2207 at 2346.299 kb on + strand, within Dsui_2207 at 2346.300 kb on + strand, within Dsui_2207 at 2346.308 kb on - strand, within Dsui_2207 at 2346.473 kb on + strand, within Dsui_2207 at 2346.473 kb on + strand, within Dsui_2207 at 2346.481 kb on - strand at 2346.481 kb on - strand, within Dsui_2207 at 2346.481 kb on - strand, within Dsui_2207 at 2346.481 kb on - strand, within Dsui_2207 at 2346.481 kb on - strand, within Dsui_2207 at 2346.481 kb on - strand, within Dsui_2207 at 2346.482 kb on - strand, within Dsui_2207 at 2346.592 kb on + strand, within Dsui_2207 at 2346.623 kb on - strand, within Dsui_2207 at 2346.735 kb on + strand, within Dsui_2207 at 2346.735 kb on + strand, within Dsui_2207 at 2346.738 kb on - strand, within Dsui_2207 at 2346.784 kb on + strand, within Dsui_2207 at 2346.857 kb on + strand, within Dsui_2207 at 2346.915 kb on + strand at 2346.916 kb on + strand at 2346.920 kb on + strand at 2347.001 kb on - strand at 2347.010 kb on - strand at 2347.023 kb on - strand at 2347.142 kb on + strand at 2347.408 kb on - strand, within Dsui_2208 at 2347.454 kb on - strand, within Dsui_2208 at 2347.510 kb on + strand, within Dsui_2208 at 2347.611 kb on - strand, within Dsui_2208 at 2347.703 kb on - strand, within Dsui_2208 at 2347.744 kb on + strand, within Dsui_2208 at 2347.754 kb on + strand, within Dsui_2208 at 2347.885 kb on - strand, within Dsui_2208 at 2347.984 kb on - strand, within Dsui_2208 at 2347.989 kb on - strand, within Dsui_2208 at 2348.044 kb on - strand at 2348.091 kb on + strand at 2348.103 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,346,131 + Dsui_2207 0.25 +1.0 2,346,131 + Dsui_2207 0.25 +0.0 2,346,131 + Dsui_2207 0.25 +1.0 2,346,155 + +0.0 2,346,155 + Dsui_2207 0.27 +0.0 2,346,193 + +1.0 2,346,193 - Dsui_2207 0.31 -1.6 2,346,237 + Dsui_2207 0.34 +0.0 2,346,238 - Dsui_2207 0.34 -1.0 2,346,254 - Dsui_2207 0.36 +1.0 2,346,254 - Dsui_2207 0.36 -1.6 2,346,299 + Dsui_2207 0.40 -2.2 2,346,300 + Dsui_2207 0.40 -1.3 2,346,308 - Dsui_2207 0.40 -0.6 2,346,473 + Dsui_2207 0.55 +1.0 2,346,473 + Dsui_2207 0.55 +1.0 2,346,481 - +1.0 2,346,481 - Dsui_2207 0.55 -0.6 2,346,481 - Dsui_2207 0.55 -1.0 2,346,481 - Dsui_2207 0.55 -0.6 2,346,481 - Dsui_2207 0.55 -0.6 2,346,481 - Dsui_2207 0.55 +1.0 2,346,482 - Dsui_2207 0.55 +1.0 2,346,592 + Dsui_2207 0.65 +0.0 2,346,623 - Dsui_2207 0.68 +0.0 2,346,735 + Dsui_2207 0.77 -0.6 2,346,735 + Dsui_2207 0.77 -0.6 2,346,738 - Dsui_2207 0.78 -1.6 2,346,784 + Dsui_2207 0.81 +0.0 2,346,857 + Dsui_2207 0.88 -1.8 2,346,915 + +1.0 2,346,916 + +1.0 2,346,920 + -1.3 2,347,001 - -1.3 2,347,010 - -1.0 2,347,023 - -0.6 2,347,142 + +1.0 2,347,408 - Dsui_2208 0.31 +0.6 2,347,454 - Dsui_2208 0.35 +0.7 2,347,510 + Dsui_2208 0.41 -0.0 2,347,611 - Dsui_2208 0.51 +0.1 2,347,703 - Dsui_2208 0.60 -0.1 2,347,744 + Dsui_2208 0.64 -0.0 2,347,754 + Dsui_2208 0.65 -1.0 2,347,885 - Dsui_2208 0.78 +0.6 2,347,984 - Dsui_2208 0.88 +0.0 2,347,989 - Dsui_2208 0.88 +0.4 2,348,044 - +0.1 2,348,091 + +1.0 2,348,103 + -0.0
Or see this region's nucleotide sequence