Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2170 and Dsui_2171 overlap by 4 nucleotides Dsui_2171 and Dsui_2172 are separated by 37 nucleotides Dsui_2172 and Dsui_2173 are separated by 172 nucleotides Dsui_2173 and Dsui_2174 are separated by 203 nucleotides
Dsui_2170: Dsui_2170 - putative iron-regulated membrane protein, at 2,306,569 to 2,308,077
_2170
Dsui_2171: Dsui_2171 - Protein of unknown function (DUF3325), at 2,308,074 to 2,308,430
_2171
Dsui_2172: Dsui_2172 - transcriptional regulator, at 2,308,468 to 2,308,944
_2172
Dsui_2173: Dsui_2173 - peroxiredoxin, Ohr subfamily, at 2,309,117 to 2,309,542
_2173
Dsui_2174: Dsui_2174 - putative signal transduction protein, at 2,309,746 to 2,310,600
_2174
Position (kb)
2308
2309 Strain fitness (log2 ratio)
-1
0
1 at 2307.470 kb on + strand at 2307.470 kb on + strand at 2307.470 kb on + strand at 2307.532 kb on + strand at 2307.594 kb on + strand at 2307.891 kb on + strand, within Dsui_2170 at 2308.009 kb on + strand at 2308.017 kb on - strand at 2308.113 kb on - strand at 2308.129 kb on + strand, within Dsui_2171 at 2308.135 kb on + strand at 2308.392 kb on + strand at 2308.409 kb on - strand at 2308.594 kb on + strand, within Dsui_2172 at 2308.594 kb on + strand, within Dsui_2172 at 2308.849 kb on + strand, within Dsui_2172 at 2308.957 kb on + strand at 2308.970 kb on + strand at 2309.060 kb on + strand at 2309.060 kb on + strand at 2309.078 kb on - strand at 2309.157 kb on - strand at 2309.199 kb on + strand, within Dsui_2173 at 2309.329 kb on + strand, within Dsui_2173 at 2309.356 kb on - strand at 2309.361 kb on - strand at 2309.536 kb on + strand at 2309.589 kb on + strand at 2309.627 kb on - strand at 2309.770 kb on - strand at 2309.781 kb on - strand at 2309.866 kb on + strand at 2309.866 kb on + strand at 2309.874 kb on - strand, within Dsui_2174 at 2309.874 kb on - strand, within Dsui_2174 at 2309.879 kb on - strand, within Dsui_2174 at 2309.896 kb on + strand, within Dsui_2174 at 2309.904 kb on - strand, within Dsui_2174 at 2309.908 kb on + strand, within Dsui_2174
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,307,470 + +1.1 2,307,470 + +0.1 2,307,470 + +1.1 2,307,532 + -0.5 2,307,594 + +1.1 2,307,891 + Dsui_2170 0.88 -1.2 2,308,009 + +0.1 2,308,017 - +1.1 2,308,113 - +1.1 2,308,129 + Dsui_2171 0.15 -0.5 2,308,135 + +1.1 2,308,392 + +1.1 2,308,409 - +1.1 2,308,594 + Dsui_2172 0.26 -0.2 2,308,594 + Dsui_2172 0.26 -1.5 2,308,849 + Dsui_2172 0.80 -0.7 2,308,957 + +0.6 2,308,970 + -1.7 2,309,060 + +0.1 2,309,060 + +1.1 2,309,078 - +1.1 2,309,157 - -1.5 2,309,199 + Dsui_2173 0.19 +1.1 2,309,329 + Dsui_2173 0.50 +0.1 2,309,356 - +1.1 2,309,361 - +1.1 2,309,536 + -0.5 2,309,589 + +0.1 2,309,627 - +1.1 2,309,770 - +0.3 2,309,781 - -0.5 2,309,866 + +1.1 2,309,866 + +1.1 2,309,874 - Dsui_2174 0.15 +0.5 2,309,874 - Dsui_2174 0.15 +1.5 2,309,879 - Dsui_2174 0.16 +0.3 2,309,896 + Dsui_2174 0.18 -1.7 2,309,904 - Dsui_2174 0.18 +0.9 2,309,908 + Dsui_2174 0.19 -0.9
Or see this region's nucleotide sequence